Variant report

Variant	rs73582528
Chromosome Location	chr11:120545628-120545629
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:120544382..120546404-chr11:120729409..120732174,2	K562	blood:

Variant related genes	Relation type
ENSG00000149403	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs58520335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58865460	1.00[AFR][1000 genomes]
rs58965576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60058140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73580417	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73580485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73580489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468881	chr11:120446830-120551100	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv556476	chr11:120446830-120551100	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1054407	chr11:120535570-120630114	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120533200-120551800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr11:120538600-120551800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:120538600-120552000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:120543800-120547000	Enhancers	HepG2	liver
5	chr11:120544000-120546200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr11:120544200-120547600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr11:120544400-120546000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:120544400-120547600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr11:120544400-120552200	Weak transcription	Brain Substantia Nigra	brain
10	chr11:120544600-120546600	Enhancers	Fetal Intestine Large	intestine
11	chr11:120544800-120547000	Enhancers	Fetal Intestine Small	intestine
12	chr11:120545000-120545800	Enhancers	Ovary	ovary
13	chr11:120545000-120546000	Enhancers	Fetal Heart	heart
14	chr11:120545000-120546000	Enhancers	NH-A	brain
15	chr11:120545000-120546200	Enhancers	HSMMtube	muscle
16	chr11:120545200-120545800	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr11:120545400-120545800	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr11:120545400-120546000	Enhancers	Fetal Muscle Trunk	muscle
19	chr11:120545400-120546400	Weak transcription	Duodenum Mucosa	Duodenum
20	chr11:120545400-120547600	Weak transcription	Fetal Kidney	kidney
21	chr11:120545600-120546000	Enhancers	Stomach Smooth Muscle	stomach
22	chr11:120545600-120547600	Weak transcription	Fetal Lung	lung

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