Variant report

Variant	rs58965576
Chromosome Location	chr11:120544568-120544569
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs58520335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58865460	1.00[AFR][1000 genomes]
rs60058140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73580417	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73580485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73580489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73582528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468881	chr11:120446830-120551100	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv556476	chr11:120446830-120551100	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1054407	chr11:120535570-120630114	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120533200-120551800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr11:120538400-120545000	Weak transcription	Ovary	ovary
3	chr11:120538600-120551800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:120538600-120552000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:120543800-120544800	Enhancers	Brain Hippocampus Middle	brain
6	chr11:120543800-120547000	Enhancers	HepG2	liver
7	chr11:120544000-120544600	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr11:120544000-120546200	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr11:120544200-120547600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr11:120544400-120544800	Enhancers	GM12878-XiMat	blood
11	chr11:120544400-120545400	Enhancers	Spleen	Spleen
12	chr11:120544400-120546000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:120544400-120547600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr11:120544400-120552200	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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