Variant report

Variant	rs73587004
Chromosome Location	chr8:51482141-51482142
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:135846774..135848617-chr8:51481190..51483855,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs35689198	1.00[AMR][1000 genomes]
rs56784337	1.00[AMR][1000 genomes]
rs57779700	1.00[AMR][1000 genomes]
rs57932462	1.00[AMR][1000 genomes]
rs58504409	1.00[AMR][1000 genomes]
rs58569505	0.89[AFR][1000 genomes]
rs60528549	1.00[AMR][1000 genomes]
rs60857053	1.00[AMR][1000 genomes]
rs61006470	1.00[AMR][1000 genomes]
rs6984653	1.00[AMR][1000 genomes]
rs6988898	1.00[AMR][1000 genomes]
rs7004506	1.00[AMR][1000 genomes]
rs73581332	1.00[AMR][1000 genomes]
rs73581333	1.00[AMR][1000 genomes]
rs73581341	1.00[AMR][1000 genomes]
rs73581344	1.00[AMR][1000 genomes]
rs73581347	1.00[AMR][1000 genomes]
rs73581350	1.00[AMR][1000 genomes]
rs73581355	1.00[AMR][1000 genomes]
rs73581358	1.00[AMR][1000 genomes]
rs73581359	1.00[AMR][1000 genomes]
rs73581367	1.00[AMR][1000 genomes]
rs73581368	1.00[AMR][1000 genomes]
rs73581374	1.00[AMR][1000 genomes]
rs73581389	1.00[AMR][1000 genomes]
rs73581391	1.00[AMR][1000 genomes]
rs73581393	1.00[AMR][1000 genomes]
rs73581394	1.00[AMR][1000 genomes]
rs73581395	1.00[AMR][1000 genomes]
rs73581399	1.00[AMR][1000 genomes]
rs73581401	1.00[AMR][1000 genomes]
rs73581402	1.00[AMR][1000 genomes]
rs73583405	1.00[AMR][1000 genomes]
rs73583409	1.00[AMR][1000 genomes]
rs73583434	1.00[AMR][1000 genomes]
rs73583436	1.00[AMR][1000 genomes]
rs73583447	1.00[AMR][1000 genomes]
rs73585160	1.00[AMR][1000 genomes]
rs73585166	1.00[AMR][1000 genomes]
rs73585184	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73587017	1.00[AMR][1000 genomes]
rs73587053	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv429914	chr8:51371447-51617647	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv531502	chr8:51390997-51703556	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3514165	chr8:51416583-51923545	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv3514166	chr8:51416583-51923545	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv890873	chr8:51462163-51612641	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51471200-51489400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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