Variant report

Variant	rs6988898
Chromosome Location	chr8:51366424-51366425
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs2923061	1.00[MEX][hapmap]
rs35689198	1.00[AMR][1000 genomes]
rs4242459	1.00[MEX][hapmap]
rs56784337	1.00[AMR][1000 genomes]
rs57779700	1.00[AMR][1000 genomes]
rs57932462	1.00[AMR][1000 genomes]
rs58504409	1.00[AMR][1000 genomes]
rs60528549	1.00[AMR][1000 genomes]
rs60857053	1.00[AMR][1000 genomes]
rs61006470	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6984653	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7004506	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs73581332	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73581333	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73581341	1.00[AMR][1000 genomes]
rs73581344	1.00[AMR][1000 genomes]
rs73581347	1.00[AMR][1000 genomes]
rs73581350	1.00[AMR][1000 genomes]
rs73581355	1.00[AMR][1000 genomes]
rs73581358	1.00[AMR][1000 genomes]
rs73581359	1.00[AMR][1000 genomes]
rs73581367	1.00[AMR][1000 genomes]
rs73581368	1.00[AMR][1000 genomes]
rs73581374	1.00[AMR][1000 genomes]
rs73581389	1.00[AMR][1000 genomes]
rs73581391	1.00[AMR][1000 genomes]
rs73581393	1.00[AMR][1000 genomes]
rs73581394	1.00[AMR][1000 genomes]
rs73581395	1.00[AMR][1000 genomes]
rs73581399	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73581401	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73581402	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73583405	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73583409	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73583434	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73583436	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73583447	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73585160	1.00[AMR][1000 genomes]
rs73585166	1.00[AMR][1000 genomes]
rs73585184	1.00[AMR][1000 genomes]
rs73587004	1.00[AMR][1000 genomes]
rs73587017	1.00[AMR][1000 genomes]
rs73587053	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv831312	chr8:51239772-51422844	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv916262	chr8:51322341-51437077	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv520800	chr8:51365953-51371910	Weak transcription Bivalent Enhancer Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51364800-51369800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr8:51365800-51375800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr8:51366200-51369000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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