Variant report

Variant	rs73583434
Chromosome Location	chr8:51362052-51362053
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs35689198	1.00[AMR][1000 genomes]
rs56784337	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57779700	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57932462	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58504409	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60528549	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60857053	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61006470	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6984653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6988898	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7004506	1.00[AMR][1000 genomes]
rs73581332	1.00[AMR][1000 genomes]
rs73581333	1.00[AMR][1000 genomes]
rs73581341	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73581344	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73581347	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73581350	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73581355	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73581358	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73581359	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73581367	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73581368	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73581374	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73581389	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73581391	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73581393	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73581394	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73581395	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73581399	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73581401	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73581402	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73583405	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73583409	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73583436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73583447	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73585160	1.00[AMR][1000 genomes]
rs73585166	1.00[AMR][1000 genomes]
rs73585184	1.00[AMR][1000 genomes]
rs73587004	1.00[AMR][1000 genomes]
rs73587017	1.00[AMR][1000 genomes]
rs73587053	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv831312	chr8:51239772-51422844	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv916262	chr8:51322341-51437077	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51360800-51363200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:51361400-51362400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:51361600-51362800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr8:51361800-51362800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr8:51361800-51365600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr8:51362000-51362400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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