Variant report

Variant	rs73591549
Chromosome Location	chr13:90275797-90275798
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs56726559	1.00[AMR][1000 genomes]
rs59755140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60088665	1.00[AMR][1000 genomes]
rs60406151	1.00[AMR][1000 genomes]
rs60956214	1.00[AMR][1000 genomes]
rs73579998	1.00[AMR][1000 genomes]
rs73580002	1.00[AMR][1000 genomes]
rs73582028	1.00[AMR][1000 genomes]
rs73582031	1.00[AMR][1000 genomes]
rs73582036	1.00[AMR][1000 genomes]
rs73582038	1.00[AMR][1000 genomes]
rs73582082	1.00[AMR][1000 genomes]
rs73591532	1.00[AFR][1000 genomes]
rs73591582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73591584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73591592	1.00[AFR][1000 genomes]
rs73593557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73593566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73595768	1.00[AMR][1000 genomes]
rs73595775	1.00[AMR][1000 genomes]
rs73595776	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053657	chr13:90100510-90578568	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1038982	chr13:90199563-90345091	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:90267000-90280200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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