Variant report

Variant	rs73591584
Chromosome Location	chr13:90299064-90299065
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs56726559	1.00[AMR][1000 genomes]
rs59755140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60088665	1.00[AMR][1000 genomes]
rs60406151	1.00[AMR][1000 genomes]
rs60956214	1.00[AMR][1000 genomes]
rs73582082	1.00[AMR][1000 genomes]
rs73591532	1.00[AFR][1000 genomes]
rs73591549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73591582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73591592	1.00[AFR][1000 genomes]
rs73593557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73593566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73595768	1.00[AMR][1000 genomes]
rs73595775	1.00[AMR][1000 genomes]
rs73595776	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053657	chr13:90100510-90578568	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1038982	chr13:90199563-90345091	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv456059	chr13:90276827-90355675	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv562640	chr13:90276827-90355675	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv2422378	chr13:90280619-90799585	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1038484	chr13:90288352-90399591	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv900865	chr13:90289165-90432585	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:90298800-90300000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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