Variant report

Variant	rs56726559
Chromosome Location	chr13:90165268-90165269
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs59755140	1.00[AMR][1000 genomes]
rs60088665	1.00[AMR][1000 genomes]
rs60406151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60956214	1.00[AMR][1000 genomes]
rs73577864	1.00[AMR][1000 genomes]
rs73579976	1.00[AMR][1000 genomes]
rs73579987	1.00[AMR][1000 genomes]
rs73579989	1.00[AMR][1000 genomes]
rs73579990	1.00[AMR][1000 genomes]
rs73579991	1.00[AMR][1000 genomes]
rs73579998	1.00[AMR][1000 genomes]
rs73580002	1.00[AMR][1000 genomes]
rs73582028	1.00[AMR][1000 genomes]
rs73582031	1.00[AMR][1000 genomes]
rs73582036	1.00[AMR][1000 genomes]
rs73582038	1.00[AMR][1000 genomes]
rs73582082	1.00[AMR][1000 genomes]
rs73591549	1.00[AMR][1000 genomes]
rs73591582	1.00[AMR][1000 genomes]
rs73591584	1.00[AMR][1000 genomes]
rs73593557	1.00[AMR][1000 genomes]
rs73593566	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048574	chr13:89650680-90232894	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1044807	chr13:89991827-90263328	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1039775	chr13:89995537-90260944	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv900860	chr13:90008941-90259291	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv428613	chr13:90012119-90165711	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv533455	chr13:90041897-90255725	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1053657	chr13:90100510-90578568	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv900864	chr13:90110725-90173515	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
9	esv3433367	chr13:90162000-90184090	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:90163400-90165600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr13:90163600-90165600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr13:90164200-90167000	Weak transcription	Fetal Lung	lung
4	chr13:90165200-90165400	Enhancers	A549	lung
5	chr13:90165200-90166000	Enhancers	HUVEC	blood vessel
6	chr13:90165200-90168000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr13:90165200-90168000	Enhancers	HUES64 Cell Line	embryonic stem cell

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