Variant report

Variant	rs60956214
Chromosome Location	chr13:90109115-90109116
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs56726559	1.00[AMR][1000 genomes]
rs60088665	1.00[AMR][1000 genomes]
rs60406151	1.00[AMR][1000 genomes]
rs73577864	1.00[AMR][1000 genomes]
rs73579976	1.00[AMR][1000 genomes]
rs73579987	1.00[AMR][1000 genomes]
rs73579989	1.00[AMR][1000 genomes]
rs73579990	1.00[AMR][1000 genomes]
rs73579991	1.00[AMR][1000 genomes]
rs73579998	1.00[AMR][1000 genomes]
rs73580002	1.00[AMR][1000 genomes]
rs73582028	1.00[AMR][1000 genomes]
rs73582031	1.00[AMR][1000 genomes]
rs73582036	1.00[AMR][1000 genomes]
rs73582038	1.00[AMR][1000 genomes]
rs73582082	1.00[AMR][1000 genomes]
rs73591549	1.00[AMR][1000 genomes]
rs73591582	1.00[AMR][1000 genomes]
rs73591584	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915862	chr13:89408920-90118030	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1040210	chr13:89584630-90156186	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1048574	chr13:89650680-90232894	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1044807	chr13:89991827-90263328	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1039775	chr13:89995537-90260944	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv900860	chr13:90008941-90259291	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv428613	chr13:90012119-90165711	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv533455	chr13:90041897-90255725	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv900862	chr13:90067507-90129913	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv900863	chr13:90067507-90145824	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv1053657	chr13:90100510-90578568	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:90106600-90111600	Enhancers	NHEK	skin
2	chr13:90107000-90111600	Enhancers	HMEC	breast
3	chr13:90107200-90110600	Enhancers	HUVEC	blood vessel
4	chr13:90107200-90111400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr13:90107200-90111400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr13:90108200-90109600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr13:90108200-90111600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr13:90108600-90109800	Weak transcription	Hela-S3	cervix
9	chr13:90108800-90109800	Weak transcription	Placenta Amnion	Placenta Amnion

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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