Variant report

Variant	rs73604783
Chromosome Location	chr6:149887885-149887886
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:149887497..149889067-chr6:149953634..149955368,2	K562	blood:
2	chr6:149865611..149871097-chr6:149883709..149888968,8	K562	blood:
3	chr6:149865083..149869048-chr6:149884009..149889859,10	MCF-7	breast:
4	chr13:79980255..79980778-chr6:149887542..149888222,2	Hela-S3	cervix:
5	chr6:149865819..149869096-chr6:149885709..149888757,8	MCF-7	breast:
6	chr6:149886502..149888168-chr6:150070978..150072960,2	K562	blood:
7	chr6:149863889..149870301-chr6:149880315..149888361,14	K562	blood:
8	chr6:149886717..149888905-chr6:150037583..150040474,2	MCF-7	breast:
9	chr6:149887413..149889033-chr6:149958089..149960817,2	K562	blood:
10	chr6:149887503..149889427-chr6:149890997..149894118,3	MCF-7	breast:
11	chr6:149884132..149889842-chr6:149966518..149971305,10	K562	blood:
12	chr6:149887426..149891060-chr6:150037726..150040656,4	K562	blood:
13	chr6:149884836..149889436-chr6:149966369..149971850,7	K562	blood:
14	chr6:149884840..149889202-chr6:150038504..150040931,4	K562	blood:
15	chr6:149887638..149889418-chr6:149897443..149899421,2	MCF-7	breast:
16	chr1:64886177..64886677-chr6:149887707..149888456,2	NB4	blood:

No data

Variant related genes	Relation type
ENSG00000131013	Chromatin interaction
ENSG00000227354	Chromatin interaction
ENSG00000131023	Chromatin interaction
ENSG00000120265	Chromatin interaction
ENSG00000139746	Chromatin interaction
ENSG00000186625	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11961451	0.86[EUR][1000 genomes]
rs11966407	0.86[EUR][1000 genomes]
rs28366680	0.81[AFR][1000 genomes]
rs28843181	0.81[AFR][1000 genomes]
rs34652961	0.83[AFR][1000 genomes]
rs57880524	0.86[EUR][1000 genomes]
rs73604755	0.83[AFR][1000 genomes]
rs73606794	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv966665	chr6:149862756-149895103	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv289	chr6:149864898-149998818	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv5534	chr6:149864898-149998818	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149885800-149888400	Active TSS	Breast Myoepithelial Primary Cells	Breast
2	chr6:149886000-149888000	Active TSS	Stomach Smooth Muscle	stomach
3	chr6:149886000-149888200	Active TSS	Rectal Mucosa Donor 29	rectum
4	chr6:149886000-149888400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:149886000-149888600	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr6:149886200-149888000	Active TSS	Primary hematopoietic stem cells	blood
7	chr6:149886200-149888000	Active TSS	Duodenum Mucosa	Duodenum
8	chr6:149886200-149888000	Active TSS	Pancreas	Pancrea
9	chr6:149886200-149888000	Active TSS	HMEC	breast
10	chr6:149886200-149888200	Active TSS	Skeletal Muscle Male	skeletal muscle
11	chr6:149886200-149888200	Active TSS	Thymus	Thymus
12	chr6:149886200-149888200	Bivalent/Poised TSS	HepG2	liver
13	chr6:149886200-149888400	Active TSS	H1 Cell Line	embryonic stem cell
14	chr6:149886200-149888400	Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr6:149886200-149888400	Active TSS	HUES6 Cell Line	embryonic stem cell
16	chr6:149886200-149888400	Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr6:149886200-149888400	Active TSS	Aorta	Aorta
18	chr6:149886200-149888400	Active TSS	Lung	lung
19	chr6:149886200-149888400	Active TSS	NHEK	skin
20	chr6:149886200-149888600	Active TSS	ES-I3 Cell Line	embryonic stem cell
21	chr6:149886200-149888600	Active TSS	H9 Cell Line	embryonic stem cell
22	chr6:149886200-149888600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr6:149886200-149888600	Active TSS	Brain Anterior Caudate	brain
24	chr6:149886200-149888600	Active TSS	Colonic Mucosa	Colon
25	chr6:149886200-149888600	Active TSS	Fetal Intestine Large	intestine
26	chr6:149886200-149888800	Active TSS	Brain Inferior Temporal Lobe	brain
27	chr6:149886200-149888800	Active TSS	Fetal Intestine Small	intestine
28	chr6:149886200-149888800	Active TSS	Fetal Kidney	kidney
29	chr6:149886200-149888800	Active TSS	Pancreatic Islets	Pancreatic Islet
30	chr6:149886200-149888800	Active TSS	Rectal Smooth Muscle	rectum
31	chr6:149886200-149888800	Active TSS	A549	lung
32	chr6:149886400-149888000	Active TSS	Primary T cells fromperipheralblood	blood
33	chr6:149886400-149888000	Active TSS	Primary hematopoietic stem cells short term culture	blood
34	chr6:149886400-149888000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr6:149886400-149888000	Active TSS	Liver	Liver
36	chr6:149886400-149888000	Active TSS	Placenta	Placenta
37	chr6:149886400-149888000	Active TSS	Fetal Thymus	thymus
38	chr6:149886400-149888200	Active TSS	Primary B cells from peripheral blood	blood
39	chr6:149886400-149888200	Active TSS	Primary T helper cells PMA-I stimulated	--
40	chr6:149886400-149888200	Active TSS	Brain Substantia Nigra	brain
41	chr6:149886400-149888200	Active TSS	Psoas Muscle	Psoas
42	chr6:149886400-149888200	Active TSS	K562	blood
43	chr6:149886400-149888400	Active TSS	Primary T helper naive cells from peripheral blood	blood
44	chr6:149886400-149888400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
45	chr6:149886400-149888400	Active TSS	Primary T killer memory cells from peripheral blood	blood
46	chr6:149886400-149888400	Active TSS	Ovary	ovary
47	chr6:149886400-149888400	Active TSS	Hela-S3	cervix
48	chr6:149886400-149888400	Active TSS	NHDF-Ad	bronchial
49	chr6:149886400-149888600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr6:149886400-149888600	Active TSS	HUES64 Cell Line	embryonic stem cell

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