Variant report
| Variant | rs28366680 |
|---|---|
| Chromosome Location | chr6:149881382-149881383 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000235168 | TF binding region |
| ENSG00000131013 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs11961781 | 0.86[AFR][1000 genomes];0.92[EUR][1000 genomes] |
| rs11963075 | 0.86[AFR][1000 genomes];0.92[EUR][1000 genomes] |
| rs17087513 | 0.92[EUR][1000 genomes] |
| rs17087543 | 0.92[EUR][1000 genomes] |
| rs17087545 | 0.92[EUR][1000 genomes] |
| rs17087564 | 0.82[EUR][1000 genomes] |
| rs17087579 | 0.92[EUR][1000 genomes] |
| rs28843181 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34652961 | 0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6924497 | 0.92[EUR][1000 genomes] |
| rs6928088 | 0.82[EUR][1000 genomes] |
| rs6928699 | 0.82[EUR][1000 genomes] |
| rs73602758 | 0.82[EUR][1000 genomes] |
| rs73602774 | 0.82[EUR][1000 genomes] |
| rs73604755 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73604757 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73604783 | 0.81[AFR][1000 genomes] |
| rs7764563 | 0.92[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv966665 | chr6:149862756-149895103 | Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv289 | chr6:149864898-149998818 | Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
| 3 | nsv5534 | chr6:149864898-149998818 | Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
| 4 | nsv886762 | chr6:149866452-150174507 | Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 41 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
