Variant report

Variant	rs17087579
Chromosome Location	chr6:149845117-149845118
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149839863..149841479-chr6:149843925..149845587,2	K562	blood:
2	chr6:149844098..149846576-chr6:149847079..149848965,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11961781	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11963075	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1339186	1.00[CEU][hapmap]
rs17087513	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17087543	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17087545	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17087564	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28366680	0.92[EUR][1000 genomes]
rs28843181	0.92[EUR][1000 genomes]
rs34652961	0.92[EUR][1000 genomes]
rs6570966	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6924497	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6928088	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6928699	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6934491	1.00[MEX][hapmap]
rs73602758	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73602774	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73604755	0.92[EUR][1000 genomes]
rs73604757	0.83[EUR][1000 genomes]
rs7746970	1.00[CEU][hapmap]
rs7761312	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs7761612	1.00[MEX][hapmap]
rs7764563	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs935386	1.00[MEX][hapmap]
rs9766101	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149807000-149849000	Weak transcription	Gastric	stomach
2	chr6:149810800-149851600	Weak transcription	Esophagus	oesophagus
3	chr6:149811200-149860600	Weak transcription	Aorta	Aorta
4	chr6:149820400-149845200	Weak transcription	Hela-S3	cervix
5	chr6:149820400-149849000	Weak transcription	Psoas Muscle	Psoas
6	chr6:149820400-149850200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:149820600-149847800	Weak transcription	Brain Substantia Nigra	brain
8	chr6:149820600-149851400	Weak transcription	NHLF	lung
9	chr6:149820600-149865200	Weak transcription	Stomach Mucosa	stomach
10	chr6:149820800-149848200	Weak transcription	Pancreas	Pancrea
11	chr6:149823800-149851800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:149824200-149846000	Weak transcription	Fetal Brain Male	brain
13	chr6:149824400-149862200	Strong transcription	Liver	Liver
14	chr6:149824600-149864200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:149825000-149851800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr6:149825200-149850200	Weak transcription	Right Ventricle	heart
17	chr6:149826000-149847600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr6:149829600-149851600	Weak transcription	Colonic Mucosa	Colon
19	chr6:149830600-149865600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr6:149831400-149851800	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr6:149832000-149865800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr6:149832200-149862200	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr6:149832800-149850200	Weak transcription	Lung	lung
24	chr6:149835000-149862000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr6:149835000-149862200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr6:149835000-149862200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr6:149835000-149862200	Strong transcription	Rectal Mucosa Donor 29	rectum
28	chr6:149835000-149863600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr6:149835200-149862400	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr6:149835400-149850400	Weak transcription	Spleen	Spleen
31	chr6:149835800-149849800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr6:149836000-149862200	Strong transcription	Fetal Thymus	thymus
33	chr6:149836200-149862400	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr6:149836400-149852200	Strong transcription	HSMM	muscle
35	chr6:149836400-149862800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr6:149837200-149862200	Strong transcription	Placenta	Placenta
37	chr6:149837200-149862200	Strong transcription	Osteobl	bone
38	chr6:149837400-149866000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr6:149837600-149862200	Strong transcription	HUES48 Cell Line	embryonic stem cell
40	chr6:149838600-149862400	Strong transcription	Primary T helper cells fromperipheralblood	blood
41	chr6:149838800-149848800	Weak transcription	Rectal Smooth Muscle	rectum
42	chr6:149838800-149862200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr6:149838800-149863000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr6:149839000-149863800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr6:149839200-149852200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr6:149839200-149862200	Strong transcription	Fetal Intestine Large	intestine
47	chr6:149839200-149862400	Strong transcription	Primary T helper cells PMA-I stimulated	--
48	chr6:149839400-149845400	Strong transcription	Fetal Muscle Trunk	muscle
49	chr6:149839400-149856200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr6:149839400-149858000	Strong transcription	Rectal Mucosa Donor 31	rectum

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