Variant report

Variant	rs7764563
Chromosome Location	chr6:149819510-149819511
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149818918..149821487-chr6:149828653..149831549,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11961781	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11963075	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17087513	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17087543	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17087545	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17087564	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17087579	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28366680	0.92[EUR][1000 genomes]
rs28843181	0.92[EUR][1000 genomes]
rs34652961	0.92[EUR][1000 genomes]
rs6570966	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6924497	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6928088	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6928699	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73602758	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73602774	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73604755	0.92[EUR][1000 genomes]
rs73604757	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv1832313	chr6:149789511-149840750	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149804400-149824600	Weak transcription	Brain Hippocampus Middle	brain
2	chr6:149806400-149832000	Weak transcription	HSMMtube	muscle
3	chr6:149806400-149844800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:149806800-149825200	Weak transcription	HSMM	muscle
5	chr6:149806800-149832400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:149807000-149832200	Weak transcription	Lung	lung
7	chr6:149807000-149849000	Weak transcription	Gastric	stomach
8	chr6:149807200-149824800	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr6:149807200-149832000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr6:149807200-149835000	Weak transcription	Spleen	Spleen
11	chr6:149807200-149842600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr6:149810200-149819800	Weak transcription	Fetal Muscle Trunk	muscle
13	chr6:149810400-149821200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:149810800-149851600	Weak transcription	Esophagus	oesophagus
15	chr6:149811200-149860600	Weak transcription	Aorta	Aorta
16	chr6:149811400-149826600	Weak transcription	Fetal Intestine Small	intestine
17	chr6:149814800-149825200	Weak transcription	Fetal Thymus	thymus
18	chr6:149815000-149819800	Weak transcription	Stomach Mucosa	stomach
19	chr6:149815200-149825600	Weak transcription	Duodenum Mucosa	Duodenum
20	chr6:149815600-149824800	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr6:149815600-149845000	Weak transcription	Small Intestine	intestine
22	chr6:149816000-149820400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr6:149816200-149820000	Weak transcription	Osteobl	bone
24	chr6:149816600-149825200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr6:149817000-149830800	Weak transcription	Brain Angular Gyrus	brain
26	chr6:149817200-149820000	Weak transcription	Hela-S3	cervix
27	chr6:149817200-149820200	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr6:149817400-149820200	Weak transcription	Brain Substantia Nigra	brain
29	chr6:149817400-149820600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr6:149817600-149821600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr6:149817600-149822200	Weak transcription	Primary B cells from cord blood	blood
32	chr6:149817800-149821600	Enhancers	Primary T helper cells PMA-I stimulated	--
33	chr6:149817800-149829000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr6:149818000-149825400	Weak transcription	NHDF-Ad	bronchial
35	chr6:149818200-149819600	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr6:149818200-149820000	Weak transcription	NH-A	brain
37	chr6:149818200-149820200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr6:149818200-149820200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr6:149818200-149820600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
40	chr6:149818200-149821000	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr6:149818200-149824600	Weak transcription	Primary B cells from peripheral blood	blood
42	chr6:149818200-149830400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr6:149818400-149825600	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr6:149818400-149826400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr6:149818400-149843800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr6:149818600-149822400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr6:149818600-149826600	Weak transcription	Primary hematopoietic stem cells	blood
48	chr6:149818800-149819600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr6:149818800-149819600	Weak transcription	Psoas Muscle	Psoas
50	chr6:149818800-149820200	Weak transcription	Primary T cells from cord blood	blood

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