Variant report

Variant	rs6924497
Chromosome Location	chr6:149813138-149813139
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11961781	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11963075	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1339186	1.00[CEU][hapmap]
rs17087513	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17087543	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17087545	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17087564	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17087579	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28366680	0.92[EUR][1000 genomes]
rs28843181	0.92[EUR][1000 genomes]
rs34652961	0.92[EUR][1000 genomes]
rs6570966	1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6928088	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6928699	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73602758	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73602774	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73604755	0.92[EUR][1000 genomes]
rs73604757	0.83[EUR][1000 genomes]
rs7746970	1.00[CEU][hapmap]
rs7761312	1.00[CEU][hapmap]
rs7764563	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv1832313	chr6:149789511-149840750	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149804400-149824600	Weak transcription	Brain Hippocampus Middle	brain
2	chr6:149806400-149832000	Weak transcription	HSMMtube	muscle
3	chr6:149806400-149844800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:149806800-149825200	Weak transcription	HSMM	muscle
5	chr6:149806800-149832400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:149807000-149814000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:149807000-149814600	Weak transcription	Fetal Thymus	thymus
8	chr6:149807000-149832200	Weak transcription	Lung	lung
9	chr6:149807000-149849000	Weak transcription	Gastric	stomach
10	chr6:149807200-149815600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:149807200-149824800	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr6:149807200-149832000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr6:149807200-149835000	Weak transcription	Spleen	Spleen
14	chr6:149807200-149842600	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr6:149807600-149813800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:149808000-149814000	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr6:149810200-149814200	Weak transcription	Stomach Mucosa	stomach
18	chr6:149810200-149819800	Weak transcription	Fetal Muscle Trunk	muscle
19	chr6:149810400-149814200	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr6:149810400-149821200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:149810600-149814000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr6:149810800-149813800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr6:149810800-149814000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr6:149810800-149851600	Weak transcription	Esophagus	oesophagus
25	chr6:149811200-149814000	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr6:149811200-149814400	Weak transcription	HepG2	liver
27	chr6:149811200-149860600	Weak transcription	Aorta	Aorta
28	chr6:149811400-149814000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr6:149811400-149826600	Weak transcription	Fetal Intestine Small	intestine
30	chr6:149811600-149814000	Weak transcription	Primary B cells from cord blood	blood
31	chr6:149812200-149814000	Weak transcription	Primary B cells from peripheral blood	blood
32	chr6:149812400-149814000	Weak transcription	GM12878-XiMat	blood
33	chr6:149813000-149814000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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