Variant report

Variant	rs7761312
Chromosome Location	chr6:149800579-149800580
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149798641..149801260-chr6:149810434..149812141,2	K562	blood:
2	chr6:149795286..149796796-chr6:149799603..149801991,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11961781	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs11963075	1.00[CEU][hapmap]
rs1339186	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17087513	1.00[CEU][hapmap]
rs17087543	1.00[CEU][hapmap]
rs17087545	1.00[CEU][hapmap]
rs17087564	1.00[CEU][hapmap]
rs17087579	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs60207346	1.00[ASN][1000 genomes]
rs6928088	1.00[CEU][hapmap]
rs6934491	1.00[MEX][hapmap]
rs73779377	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746970	1.00[CEU][hapmap]
rs7761612	1.00[MEX][hapmap]
rs935386	1.00[MEX][hapmap]
rs9498306	1.00[MEX][hapmap]
rs9498309	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv470866	chr6:149744632-149806552	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv1832313	chr6:149789511-149840750	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149776800-149802000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr6:149782200-149802000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:149783200-149802400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:149789400-149806000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:149790200-149802000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr6:149790400-149802200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr6:149792600-149803000	Weak transcription	Fetal Brain Female	brain
8	chr6:149793200-149801800	Weak transcription	Thymus	Thymus
9	chr6:149795000-149801800	Genic enhancers	Primary B cells from peripheral blood	blood
10	chr6:149795000-149802000	Weak transcription	Placenta	Placenta
11	chr6:149795200-149802800	Weak transcription	Right Atrium	heart
12	chr6:149795400-149800600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr6:149795400-149801200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr6:149795600-149801600	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr6:149795600-149801800	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr6:149795600-149802800	Weak transcription	Fetal Intestine Small	intestine
17	chr6:149795800-149801800	Weak transcription	Lung	lung
18	chr6:149796000-149801200	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr6:149796000-149802000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr6:149796000-149803000	Weak transcription	Right Ventricle	heart
21	chr6:149796400-149802200	Weak transcription	Spleen	Spleen
22	chr6:149796600-149801000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr6:149796600-149802000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:149796600-149802600	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr6:149796600-149803400	Weak transcription	HepG2	liver
26	chr6:149797000-149802000	Weak transcription	Small Intestine	intestine
27	chr6:149799000-149801600	Enhancers	Primary B cells from cord blood	blood
28	chr6:149799600-149803800	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
29	chr6:149799800-149800800	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr6:149799800-149801400	Enhancers	Primary T cells fromperipheralblood	blood
31	chr6:149799800-149802000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
32	chr6:149800000-149806000	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
33	chr6:149800200-149800600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
34	chr6:149800200-149800800	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr6:149800200-149800800	Transcr. at gene 5' and 3'	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr6:149800200-149800800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr6:149800200-149801000	Active TSS	GM12878-XiMat	blood
38	chr6:149800200-149801800	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
39	chr6:149800200-149803000	Weak transcription	Esophagus	oesophagus
40	chr6:149800400-149802000	Enhancers	Primary T killer memory cells from peripheral blood	blood
41	chr6:149800400-149805800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links