Variant report

Variant	rs11963075
Chromosome Location	chr6:149860361-149860362
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:149858502..149860494-chr6:149865372..149866981,2	MCF-7	breast:
2	chr6:149855772..149857687-chr6:149858775..149860492,2	K562	blood:
3	chr6:149849947..149853709-chr6:149858888..149862438,4	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11961781	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1339186	1.00[CEU][hapmap]
rs17087513	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17087543	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17087545	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17087564	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17087579	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28366680	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs28843181	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs34652961	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6570966	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6924497	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6928088	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6928699	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73602758	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73602774	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73604755	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs73604757	0.83[EUR][1000 genomes]
rs7746970	1.00[CEU][hapmap]
rs7761312	1.00[CEU][hapmap]
rs7764563	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149811200-149860600	Weak transcription	Aorta	Aorta
2	chr6:149820600-149865200	Weak transcription	Stomach Mucosa	stomach
3	chr6:149824400-149862200	Strong transcription	Liver	Liver
4	chr6:149824600-149864200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:149830600-149865600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:149832000-149865800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr6:149832200-149862200	Strong transcription	Primary T cells fromperipheralblood	blood
8	chr6:149835000-149862000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr6:149835000-149862200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:149835000-149862200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr6:149835000-149862200	Strong transcription	Rectal Mucosa Donor 29	rectum
12	chr6:149835000-149863600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:149835200-149862400	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr6:149836000-149862200	Strong transcription	Fetal Thymus	thymus
15	chr6:149836200-149862400	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr6:149836400-149862800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:149837200-149862200	Strong transcription	Placenta	Placenta
18	chr6:149837200-149862200	Strong transcription	Osteobl	bone
19	chr6:149837400-149866000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:149837600-149862200	Strong transcription	HUES48 Cell Line	embryonic stem cell
21	chr6:149838600-149862400	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr6:149838800-149862200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr6:149838800-149863000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:149839000-149863800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr6:149839200-149862200	Strong transcription	Fetal Intestine Large	intestine
26	chr6:149839200-149862400	Strong transcription	Primary T helper cells PMA-I stimulated	--
27	chr6:149839400-149862200	Strong transcription	Adipose Nuclei	Adipose
28	chr6:149839800-149862000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr6:149839800-149862400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr6:149839800-149862400	Strong transcription	Dnd41	blood
31	chr6:149839800-149862800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr6:149840000-149862200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr6:149840200-149862000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr6:149840200-149862200	Strong transcription	Duodenum Mucosa	Duodenum
35	chr6:149840200-149862400	Strong transcription	HUES64 Cell Line	embryonic stem cell
36	chr6:149840400-149861800	Strong transcription	Primary neutrophils fromperipheralblood	blood
37	chr6:149840400-149862200	Strong transcription	HUES6 Cell Line	embryonic stem cell
38	chr6:149840400-149862800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr6:149840600-149862400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr6:149840600-149863600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr6:149841000-149862200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr6:149841200-149865200	Weak transcription	Fetal Heart	heart
43	chr6:149842400-149862400	Strong transcription	Primary B cells from cord blood	blood
44	chr6:149842600-149862400	Strong transcription	Primary B cells from peripheral blood	blood
45	chr6:149843000-149862200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr6:149843800-149861800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr6:149843800-149862400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr6:149844000-149861200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr6:149844200-149862400	Strong transcription	NHDF-Ad	bronchial
50	chr6:149845000-149862200	Strong transcription	Stomach Smooth Muscle	stomach

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