Variant report

Variant	rs73604799
Chromosome Location	chr6:149899834-149899835
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11963941	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11964790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11964826	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17087440	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17087477	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17087520	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17087666	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35077558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35515786	1.00[AFR][1000 genomes]
rs56859590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57065071	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57925355	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61666489	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6926725	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6926874	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6938702	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73602752	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73602754	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604736	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604737	0.90[AFR][1000 genomes]
rs73604743	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604754	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604779	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604781	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604784	1.00[AFR][1000 genomes]
rs73604790	1.00[AFR][1000 genomes]
rs73604795	1.00[AFR][1000 genomes]
rs73606715	1.00[AFR][1000 genomes]
rs73606737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73606738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7746594	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7771139	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7773304	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9689443	1.00[AFR][1000 genomes]
rs9766104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9767369	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv289	chr6:149864898-149998818	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv5534	chr6:149864898-149998818	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149888400-149901600	Weak transcription	Aorta	Aorta
2	chr6:149888400-149902000	Weak transcription	Gastric	stomach
3	chr6:149888400-149911600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:149888600-149901400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:149888600-149901400	Weak transcription	Colonic Mucosa	Colon
6	chr6:149888600-149901600	Weak transcription	NH-A	brain
7	chr6:149888600-149905200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:149888600-149907600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:149888600-149909800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:149888600-149912800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr6:149888600-149922000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:149888800-149901400	Weak transcription	Fetal Brain Female	brain
13	chr6:149888800-149901600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:149888800-149901600	Weak transcription	NHLF	lung
15	chr6:149888800-149901800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr6:149888800-149904800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr6:149888800-149914800	Weak transcription	A549	lung
18	chr6:149889000-149901400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr6:149889000-149901600	Weak transcription	NHDF-Ad	bronchial
20	chr6:149889000-149902000	Weak transcription	Osteobl	bone
21	chr6:149889000-149905400	Weak transcription	HSMMtube	muscle
22	chr6:149889000-149908400	Weak transcription	Pancreas	Pancrea
23	chr6:149889000-149928000	Weak transcription	Stomach Mucosa	stomach
24	chr6:149889200-149919600	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr6:149889400-149901200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr6:149889400-149901600	Weak transcription	Colon Smooth Muscle	Colon
27	chr6:149889400-149911800	Weak transcription	Psoas Muscle	Psoas
28	chr6:149889400-149924200	Weak transcription	Fetal Heart	heart
29	chr6:149889600-149914200	Weak transcription	Hela-S3	cervix
30	chr6:149889600-149931400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr6:149891200-149911200	Weak transcription	Small Intestine	intestine
32	chr6:149892200-149901400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr6:149893800-149926600	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr6:149894200-149901600	Weak transcription	HMEC	breast
35	chr6:149894200-149920000	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr6:149894400-149900000	Strong transcription	HepG2	liver
37	chr6:149894400-149900200	Strong transcription	Primary T helper cells PMA-I stimulated	--
38	chr6:149894800-149901400	Weak transcription	HUVEC	blood vessel
39	chr6:149895000-149901400	Weak transcription	Fetal Brain Male	brain
40	chr6:149895600-149901400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr6:149895600-149923200	Strong transcription	Dnd41	blood
42	chr6:149895800-149904000	Strong transcription	GM12878-XiMat	blood
43	chr6:149896200-149903400	Strong transcription	Primary B cells from cord blood	blood
44	chr6:149896800-149901600	Weak transcription	K562	blood
45	chr6:149896800-149903400	Strong transcription	Primary hematopoietic stem cells	blood
46	chr6:149896800-149904400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr6:149897000-149900000	Strong transcription	Skeletal Muscle Female	skeletal muscle
48	chr6:149897200-149901200	Weak transcription	Brain Substantia Nigra	brain
49	chr6:149897200-149902600	Weak transcription	Brain Hippocampus Middle	brain
50	chr6:149897200-149909400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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