Variant report

Variant	rs35077558
Chromosome Location	chr6:149879478-149879479
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149865699..149869050-chr6:149878682..149882030,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131013	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11963941	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11964790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11964826	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17087440	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17087477	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17087520	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17087666	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35515786	1.00[AFR][1000 genomes]
rs56859590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57065071	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57925355	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61666489	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6926725	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6926874	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6938702	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73602752	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73602754	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604736	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604737	0.90[AFR][1000 genomes]
rs73604743	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604754	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604779	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604781	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604784	1.00[AFR][1000 genomes]
rs73604790	1.00[AFR][1000 genomes]
rs73604795	1.00[AFR][1000 genomes]
rs73604799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73606715	1.00[AFR][1000 genomes]
rs73606737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73606738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7746594	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7771139	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7773304	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9689443	1.00[AFR][1000 genomes]
rs9766104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9767369	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv966665	chr6:149862756-149895103	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv289	chr6:149864898-149998818	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv5534	chr6:149864898-149998818	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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