Variant report

Variant	rs73604754
Chromosome Location	chr6:149870017-149870018
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:149867616..149870939-chr6:149871869..149874577,3	K562	blood:
2	chr6:149865922..149868686-chr6:149869430..149871815,2	MCF-7	breast:
3	chr6:149865611..149871097-chr6:149883709..149888968,8	K562	blood:
4	chr6:149863889..149870301-chr6:149880315..149888361,14	K562	blood:
5	chr6:149866042..149868697-chr6:149869161..149871051,2	K562	blood:

Variant related genes	Relation type
ENSG00000131013	Chromatin interaction
ENSG00000055211	Chromatin interaction
ENSG00000235168	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11963941	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11964790	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11964826	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17087440	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17087477	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17087520	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17087666	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35077558	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35515786	0.98[AFR][1000 genomes]
rs56859590	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57065071	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57925355	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61666489	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6926725	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6926874	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6938702	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73602752	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73602754	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604736	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604737	0.88[AFR][1000 genomes]
rs73604743	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604776	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604778	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604779	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604781	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604784	0.98[AFR][1000 genomes]
rs73604790	0.98[AFR][1000 genomes]
rs73604795	0.98[AFR][1000 genomes]
rs73604799	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73606715	0.98[AFR][1000 genomes]
rs73606737	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73606738	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7746594	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7771139	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7773304	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9689443	0.98[AFR][1000 genomes]
rs9766104	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9767369	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv966665	chr6:149862756-149895103	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv289	chr6:149864898-149998818	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv5534	chr6:149864898-149998818	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149868000-149873000	Weak transcription	Gastric	stomach
2	chr6:149868000-149873400	Weak transcription	Fetal Heart	heart

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