Variant report

Variant	rs73627713
Chromosome Location	chr19:37705204-37705205
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TAL1	chr19:37705187-37705556	K562	blood:	n/a	n/a

Variant related genes	Relation type
ZNF383	TF binding region
ENSG00000267360	TF binding region
ZNF585B	TF binding region

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs34905469	1.00[AMR][1000 genomes]
rs57138011	0.90[AFR][1000 genomes]
rs58634134	1.00[AMR][1000 genomes]
rs58716620	1.00[AFR][1000 genomes]
rs61047901	0.90[AFR][1000 genomes]
rs61525939	0.90[AFR][1000 genomes]
rs61564855	1.00[AMR][1000 genomes]
rs61745621	1.00[AMR][1000 genomes]
rs73620844	1.00[AMR][1000 genomes]
rs73622707	1.00[AMR][1000 genomes]
rs73622717	1.00[AMR][1000 genomes]
rs73622721	1.00[AMR][1000 genomes]
rs73622746	1.00[AMR][1000 genomes]
rs73622786	1.00[AMR][1000 genomes]
rs73622787	1.00[AMR][1000 genomes]
rs73623537	1.00[AMR][1000 genomes]
rs73623558	1.00[AMR][1000 genomes]
rs73623598	1.00[AMR][1000 genomes]
rs73624817	1.00[AMR][1000 genomes]
rs73624829	1.00[AMR][1000 genomes]
rs73624840	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73624842	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73624843	1.00[AMR][1000 genomes]
rs73624844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73625250	1.00[AMR][1000 genomes]
rs73625268	1.00[AMR][1000 genomes]
rs73626554	1.00[AMR][1000 genomes]
rs73626570	1.00[AMR][1000 genomes]
rs73627719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73627722	1.00[AFR][1000 genomes]
rs73627729	1.00[AFR][1000 genomes]
rs73627740	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	esv3497360	chr19:37290273-37745365	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	esv3497361	chr19:37290273-37745365	Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv458568	chr19:37325826-37747108	Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
7	nsv579461	chr19:37325826-37747108	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	nsv911652	chr19:37437106-37774299	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
9	nsv911654	chr19:37487632-37758082	Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
10	nsv911655	chr19:37646745-37758082	ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37701800-37708400	Weak transcription	Fetal Brain Male	brain
2	chr19:37702000-37708000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr19:37702200-37707800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr19:37702200-37708000	Weak transcription	Primary B cells from cord blood	blood
5	chr19:37702200-37708200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr19:37702200-37708200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr19:37702200-37708400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr19:37702200-37708400	Weak transcription	Fetal Heart	heart
9	chr19:37702400-37708000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr19:37702400-37708200	Weak transcription	Brain Angular Gyrus	brain
11	chr19:37702400-37708200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr19:37702400-37708200	Weak transcription	K562	blood
13	chr19:37702400-37708400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr19:37702600-37707600	Weak transcription	Dnd41	blood
15	chr19:37702600-37708200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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