Variant report

Variant	rs58634134
Chromosome Location	chr19:37679195-37679196
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs34905469	1.00[AMR][1000 genomes]
rs59619234	1.00[AMR][1000 genomes]
rs61564855	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61745621	1.00[AMR][1000 genomes]
rs73620844	1.00[AMR][1000 genomes]
rs73621723	1.00[AMR][1000 genomes]
rs73622707	1.00[AMR][1000 genomes]
rs73622717	1.00[AMR][1000 genomes]
rs73622721	1.00[AMR][1000 genomes]
rs73622746	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73622766	0.82[AFR][1000 genomes]
rs73622770	0.82[AFR][1000 genomes]
rs73622774	0.82[AFR][1000 genomes]
rs73622786	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73622787	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623525	1.00[AMR][1000 genomes]
rs73623535	1.00[AMR][1000 genomes]
rs73623537	1.00[AMR][1000 genomes]
rs73623558	1.00[AMR][1000 genomes]
rs73623598	1.00[AMR][1000 genomes]
rs73624806	0.82[AFR][1000 genomes]
rs73624817	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73624829	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73624840	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73624842	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73624843	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73624844	1.00[AMR][1000 genomes]
rs73625237	0.85[AFR][1000 genomes]
rs73625250	1.00[AMR][1000 genomes]
rs73625268	1.00[AMR][1000 genomes]
rs73626554	1.00[AMR][1000 genomes]
rs73626570	1.00[AMR][1000 genomes]
rs73627713	1.00[AMR][1000 genomes]
rs73627719	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	esv3497360	chr19:37290273-37745365	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
8	esv3497361	chr19:37290273-37745365	Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	nsv458568	chr19:37325826-37747108	Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
10	nsv579461	chr19:37325826-37747108	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
11	nsv911652	chr19:37437106-37774299	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
12	nsv911654	chr19:37487632-37758082	Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
13	nsv911655	chr19:37646745-37758082	ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37668000-37686000	ZNF genes & repeats	Liver	Liver
2	chr19:37670000-37681200	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr19:37672000-37686400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
4	chr19:37672200-37686000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr19:37672800-37686000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr19:37673200-37690600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
7	chr19:37673400-37685400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr19:37673800-37685600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr19:37675000-37701000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr19:37675200-37680400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr19:37676600-37680000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
12	chr19:37676600-37680800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
13	chr19:37676600-37685200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr19:37676800-37680800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr19:37676800-37680800	ZNF genes & repeats	Psoas Muscle	Psoas
16	chr19:37676800-37681000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
17	chr19:37676800-37681000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr19:37676800-37681000	ZNF genes & repeats	Dnd41	blood
19	chr19:37676800-37681200	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr19:37676800-37683000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
21	chr19:37676800-37683400	ZNF genes & repeats	Fetal Lung	lung
22	chr19:37676800-37684600	ZNF genes & repeats	Fetal Muscle Leg	muscle
23	chr19:37676800-37686000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
24	chr19:37676800-37686000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
25	chr19:37677000-37679800	ZNF genes & repeats	Brain Hippocampus Middle	brain
26	chr19:37677000-37679800	ZNF genes & repeats	Fetal Heart	heart
27	chr19:37677000-37680200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr19:37677000-37680400	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr19:37677000-37680600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr19:37677000-37680600	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr19:37677000-37680800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
32	chr19:37677000-37680800	ZNF genes & repeats	Primary B cells from cord blood	blood
33	chr19:37677000-37680800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
34	chr19:37677000-37680800	ZNF genes & repeats	Fetal Kidney	kidney
35	chr19:37677000-37680800	Strong transcription	Fetal Thymus	thymus
36	chr19:37677000-37680800	ZNF genes & repeats	Small Intestine	intestine
37	chr19:37677000-37680800	ZNF genes & repeats	A549	lung
38	chr19:37677000-37681000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
39	chr19:37677000-37681000	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr19:37677000-37681000	ZNF genes & repeats	Colon Smooth Muscle	Colon
41	chr19:37677000-37681000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
42	chr19:37677000-37681000	Strong transcription	Placenta	Placenta
43	chr19:37677000-37681200	ZNF genes & repeats	Primary T cells from cord blood	blood
44	chr19:37677000-37681200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
45	chr19:37677000-37681200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr19:37677000-37681200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr19:37677000-37681200	ZNF genes & repeats	Fetal Muscle Trunk	muscle
48	chr19:37677000-37681200	ZNF genes & repeats	Left Ventricle	heart
49	chr19:37677000-37681200	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
50	chr19:37677000-37683200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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