Variant report

Variant	rs73623535
Chromosome Location	chr19:37484492-37484493
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10421077	1.00[AMR][1000 genomes]
rs10423796	1.00[AMR][1000 genomes]
rs11084870	1.00[AMR][1000 genomes]
rs34905469	1.00[AMR][1000 genomes]
rs58634134	1.00[AMR][1000 genomes]
rs59619234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60735849	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61408379	1.00[AMR][1000 genomes]
rs61564855	1.00[AMR][1000 genomes]
rs61745621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73612927	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73612932	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73618488	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73618491	1.00[AMR][1000 genomes]
rs73620041	1.00[AMR][1000 genomes]
rs73620844	1.00[AMR][1000 genomes]
rs73621723	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73622707	1.00[AMR][1000 genomes]
rs73622717	1.00[AMR][1000 genomes]
rs73622721	1.00[AMR][1000 genomes]
rs73622746	1.00[AMR][1000 genomes]
rs73622786	1.00[AMR][1000 genomes]
rs73622787	1.00[AMR][1000 genomes]
rs73623525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623543	1.00[AFR][1000 genomes]
rs73623553	1.00[AFR][1000 genomes]
rs73623558	1.00[AMR][1000 genomes]
rs73623598	1.00[AMR][1000 genomes]
rs73624817	1.00[AMR][1000 genomes]
rs73624829	1.00[AMR][1000 genomes]
rs73624840	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73624842	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73624843	1.00[AMR][1000 genomes]
rs73624844	1.00[AMR][1000 genomes]
rs73625237	0.90[AFR][1000 genomes]
rs73625250	1.00[AMR][1000 genomes]
rs73625268	1.00[AMR][1000 genomes]
rs73626554	1.00[AMR][1000 genomes]
rs73626570	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	esv3497360	chr19:37290273-37745365	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	esv3497361	chr19:37290273-37745365	Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
10	nsv458568	chr19:37325826-37747108	Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
11	nsv579461	chr19:37325826-37747108	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
12	nsv523848	chr19:37357289-37487632	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
13	nsv833818	chr19:37427808-37602800	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
14	nsv579463	chr19:37437106-37488055	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
15	nsv911652	chr19:37437106-37774299	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
16	esv3436624	chr19:37475858-37484722	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a
17	nsv911653	chr19:37482151-37556673	ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37465000-37487200	Weak transcription	Placenta	Placenta
2	chr19:37468800-37487800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr19:37472200-37485800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr19:37472200-37487000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr19:37472200-37487400	Weak transcription	Brain Angular Gyrus	brain
6	chr19:37476800-37489400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr19:37479200-37489000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
8	chr19:37479800-37489000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
9	chr19:37480200-37486400	ZNF genes & repeats	Fetal Brain Female	brain
10	chr19:37480400-37488800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
11	chr19:37480400-37489000	ZNF genes & repeats	Primary T cells from cord blood	blood
12	chr19:37480400-37489000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
13	chr19:37480400-37489000	ZNF genes & repeats	Liver	Liver
14	chr19:37481400-37489000	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
15	chr19:37481600-37488600	ZNF genes & repeats	Adipose Nuclei	Adipose
16	chr19:37481800-37484600	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
17	chr19:37481800-37488800	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
18	chr19:37481800-37489400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
19	chr19:37482000-37484600	ZNF genes & repeats	Primary B cells from cord blood	blood
20	chr19:37482200-37486400	ZNF genes & repeats	Brain Germinal Matrix	brain
21	chr19:37482200-37486400	ZNF genes & repeats	Fetal Intestine Large	intestine
22	chr19:37482400-37484800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr19:37482600-37488800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr19:37482600-37489000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr19:37482800-37485400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr19:37482800-37485600	Weak transcription	Fetal Intestine Small	intestine
27	chr19:37482800-37487200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr19:37482800-37487400	Weak transcription	HSMM	muscle
29	chr19:37483000-37485600	Weak transcription	Left Ventricle	heart
30	chr19:37483000-37485800	Weak transcription	Fetal Muscle Leg	muscle
31	chr19:37483000-37486000	Weak transcription	Pancreas	Pancrea
32	chr19:37483200-37487800	Weak transcription	Gastric	stomach
33	chr19:37483400-37485600	Weak transcription	Fetal Stomach	stomach
34	chr19:37483600-37484600	ZNF genes & repeats	Brain Hippocampus Middle	brain
35	chr19:37483600-37484600	ZNF genes & repeats	Colon Smooth Muscle	Colon
36	chr19:37483600-37484600	ZNF genes & repeats	Fetal Heart	heart
37	chr19:37483600-37485000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
38	chr19:37483600-37485400	ZNF genes & repeats	Fetal Lung	lung
39	chr19:37483600-37485400	ZNF genes & repeats	Dnd41	blood
40	chr19:37483600-37487200	Weak transcription	Rectal Smooth Muscle	rectum
41	chr19:37483800-37485600	Weak transcription	Aorta	Aorta
42	chr19:37483800-37485600	Weak transcription	Fetal Muscle Trunk	muscle
43	chr19:37483800-37485600	Weak transcription	Lung	lung
44	chr19:37483800-37485600	Weak transcription	Ovary	ovary
45	chr19:37483800-37485600	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr19:37483800-37486200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr19:37483800-37487000	Weak transcription	Osteobl	bone
48	chr19:37483800-37487400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr19:37483800-37487600	Weak transcription	Right Ventricle	heart
50	chr19:37484000-37486200	Weak transcription	Rectal Mucosa Donor 29	rectum

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