Variant report

Variant	rs61408379
Chromosome Location	chr19:37409708-37409709
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10405290	1.00[AFR][1000 genomes]
rs10412740	1.00[AFR][1000 genomes]
rs10419369	0.96[AFR][1000 genomes]
rs10421077	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10421212	0.96[AFR][1000 genomes]
rs10423796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11084870	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28829568	0.81[AFR][1000 genomes]
rs34905469	1.00[AMR][1000 genomes]
rs59619234	1.00[AMR][1000 genomes]
rs60735849	1.00[AMR][1000 genomes]
rs61745621	1.00[AMR][1000 genomes]
rs73612927	1.00[AMR][1000 genomes]
rs73612932	1.00[AMR][1000 genomes]
rs73618488	1.00[AMR][1000 genomes]
rs73618491	1.00[AMR][1000 genomes]
rs73620041	1.00[AMR][1000 genomes]
rs73620844	1.00[AMR][1000 genomes]
rs73621723	1.00[AMR][1000 genomes]
rs73623525	1.00[AMR][1000 genomes]
rs73623535	1.00[AMR][1000 genomes]
rs73623537	1.00[AMR][1000 genomes]
rs73623558	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623598	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73625250	1.00[AMR][1000 genomes]
rs73625268	1.00[AMR][1000 genomes]
rs73626554	1.00[AMR][1000 genomes]
rs73626570	1.00[AMR][1000 genomes]
rs73626771	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	nsv521605	chr19:37261810-37483444	ZNF genes & repeats Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv1060155	chr19:37274915-37458788	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv544000	chr19:37274915-37458788	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
10	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	esv3497360	chr19:37290273-37745365	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
12	esv3497361	chr19:37290273-37745365	Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
13	nsv911651	chr19:37300554-37428465	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
14	nsv458568	chr19:37325826-37747108	Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
15	nsv579461	chr19:37325826-37747108	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
16	nsv458569	chr19:37331614-37412887	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
17	nsv579462	chr19:37331614-37412887	Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
18	nsv523848	chr19:37357289-37487632	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37404600-37409800	ZNF genes & repeats	A549	lung
2	chr19:37405600-37410000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
3	chr19:37408000-37410800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr19:37408200-37410200	Weak transcription	Pancreas	Pancrea
5	chr19:37408200-37410200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr19:37408200-37410400	Weak transcription	Esophagus	oesophagus
7	chr19:37408200-37413000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr19:37408200-37413000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr19:37408200-37413000	Weak transcription	Aorta	Aorta
10	chr19:37408200-37413000	Weak transcription	Colonic Mucosa	Colon
11	chr19:37408200-37436400	Weak transcription	Fetal Thymus	thymus
12	chr19:37408200-37440600	Weak transcription	Stomach Mucosa	stomach
13	chr19:37408400-37410200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr19:37408400-37410200	Weak transcription	Fetal Stomach	stomach
15	chr19:37408400-37410200	Weak transcription	Psoas Muscle	Psoas
16	chr19:37408400-37410400	Weak transcription	Gastric	stomach
17	chr19:37408400-37411800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr19:37408400-37411800	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr19:37408400-37412800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr19:37408400-37412800	Weak transcription	HUVEC	blood vessel
21	chr19:37408400-37413000	Weak transcription	Fetal Intestine Large	intestine
22	chr19:37408400-37413000	Weak transcription	Spleen	Spleen
23	chr19:37408400-37417000	Weak transcription	Fetal Kidney	kidney
24	chr19:37408400-37440600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr19:37408600-37409800	Weak transcription	NHEK	skin
26	chr19:37408600-37410000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr19:37408600-37410200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr19:37408600-37410800	Strong transcription	Primary T helper cells PMA-I stimulated	--
29	chr19:37408600-37412600	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr19:37408600-37412800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr19:37408600-37412800	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr19:37408600-37439600	Weak transcription	Fetal Heart	heart
33	chr19:37408800-37409800	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
34	chr19:37408800-37409800	Genic enhancers	Dnd41	blood
35	chr19:37408800-37410600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr19:37408800-37411000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
37	chr19:37408800-37411200	Strong transcription	Ovary	ovary
38	chr19:37408800-37414800	Strong transcription	Fetal Muscle Trunk	muscle
39	chr19:37408800-37415200	Strong transcription	Left Ventricle	heart
40	chr19:37409000-37409800	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr19:37409000-37409800	Strong transcription	Fetal Brain Male	brain
42	chr19:37409000-37410000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr19:37409000-37410000	Strong transcription	Primary neutrophils fromperipheralblood	blood
44	chr19:37409000-37410200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr19:37409000-37410400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr19:37409000-37410600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr19:37409000-37410600	Strong transcription	Brain Inferior Temporal Lobe	brain
48	chr19:37409000-37410600	Strong transcription	HSMMtube	muscle
49	chr19:37409000-37410800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
50	chr19:37409000-37410800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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