Variant report

Variant	rs73626554
Chromosome Location	chr19:37588188-37588189
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10421077	1.00[AMR][1000 genomes]
rs10423796	1.00[AMR][1000 genomes]
rs11084870	1.00[AMR][1000 genomes]
rs34905469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58634134	1.00[AMR][1000 genomes]
rs59619234	1.00[AMR][1000 genomes]
rs60735849	1.00[AMR][1000 genomes]
rs61408379	1.00[AMR][1000 genomes]
rs61564855	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61745621	1.00[AMR][1000 genomes]
rs73612927	1.00[AMR][1000 genomes]
rs73612932	1.00[AMR][1000 genomes]
rs73618488	1.00[AMR][1000 genomes]
rs73618491	1.00[AMR][1000 genomes]
rs73620041	1.00[AMR][1000 genomes]
rs73620844	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73620886	1.00[AFR][1000 genomes]
rs73621723	1.00[AMR][1000 genomes]
rs73622707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73622717	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73622721	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73622746	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73622766	0.91[AFR][1000 genomes]
rs73622770	0.91[AFR][1000 genomes]
rs73622774	0.91[AFR][1000 genomes]
rs73622786	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73622787	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623525	1.00[AMR][1000 genomes]
rs73623535	1.00[AMR][1000 genomes]
rs73623537	1.00[AMR][1000 genomes]
rs73623558	1.00[AMR][1000 genomes]
rs73623598	1.00[AMR][1000 genomes]
rs73624806	0.91[AFR][1000 genomes]
rs73624817	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73624829	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73624840	1.00[AMR][1000 genomes]
rs73624842	1.00[AMR][1000 genomes]
rs73624843	1.00[AMR][1000 genomes]
rs73624844	1.00[AMR][1000 genomes]
rs73625237	0.86[AFR][1000 genomes]
rs73625250	1.00[AMR][1000 genomes]
rs73625268	1.00[AMR][1000 genomes]
rs73626570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73627713	1.00[AMR][1000 genomes]
rs73627719	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	esv3497360	chr19:37290273-37745365	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	esv3497361	chr19:37290273-37745365	Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
10	nsv458568	chr19:37325826-37747108	Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
11	nsv579461	chr19:37325826-37747108	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
12	nsv833818	chr19:37427808-37602800	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
13	nsv911652	chr19:37437106-37774299	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
14	nsv911654	chr19:37487632-37758082	Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37571000-37594800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr19:37572400-37594600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
3	chr19:37572600-37595400	ZNF genes & repeats	Adipose Nuclei	Adipose
4	chr19:37572800-37594600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
5	chr19:37572800-37594800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
6	chr19:37572800-37595400	ZNF genes & repeats	Liver	Liver
7	chr19:37575400-37592400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr19:37575400-37595200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr19:37575800-37594800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
10	chr19:37576200-37591200	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
11	chr19:37576200-37595600	ZNF genes & repeats	Ovary	ovary
12	chr19:37576200-37595800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
13	chr19:37577400-37592400	Strong transcription	Skeletal Muscle Male	skeletal muscle
14	chr19:37578800-37594600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
15	chr19:37578800-37594800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr19:37579000-37594800	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
17	chr19:37579200-37593800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
18	chr19:37579400-37594800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
19	chr19:37579600-37595400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr19:37579800-37590200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
21	chr19:37579800-37591200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr19:37579800-37594800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
23	chr19:37579800-37595000	ZNF genes & repeats	Fetal Brain Female	brain
24	chr19:37580000-37590400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr19:37580000-37590600	Weak transcription	Hela-S3	cervix
26	chr19:37580600-37589600	Strong transcription	Skeletal Muscle Female	skeletal muscle
27	chr19:37581000-37589200	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
28	chr19:37581800-37591400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
29	chr19:37583200-37593000	Weak transcription	Osteobl	bone
30	chr19:37584000-37591200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr19:37584400-37591400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
32	chr19:37584600-37590000	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr19:37584600-37591200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr19:37584600-37595000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr19:37584800-37588200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr19:37584800-37588800	Weak transcription	Thymus	Thymus
37	chr19:37584800-37589000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr19:37584800-37590800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr19:37585000-37590600	Weak transcription	Right Ventricle	heart
40	chr19:37585000-37592400	Weak transcription	Stomach Mucosa	stomach
41	chr19:37585400-37591000	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr19:37586000-37588800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr19:37586000-37594800	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
44	chr19:37586200-37592000	ZNF genes & repeats	Primary T cells from cord blood	blood
45	chr19:37586200-37594800	ZNF genes & repeats	Colon Smooth Muscle	Colon
46	chr19:37586200-37595000	ZNF genes & repeats	Dnd41	blood
47	chr19:37586400-37589200	Weak transcription	Fetal Kidney	kidney
48	chr19:37586600-37588400	Strong transcription	Placenta	Placenta
49	chr19:37586600-37594800	ZNF genes & repeats	Brain Anterior Caudate	brain
50	chr19:37586800-37588800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links