Variant report

Variant	rs10421077
Chromosome Location	chr19:37425572-37425573
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10405290	0.92[AFR][1000 genomes]
rs10412740	0.92[AFR][1000 genomes]
rs10419369	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs10421212	0.89[AFR][1000 genomes]
rs10423796	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10426088	1.00[YRI][hapmap]
rs11084870	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28829568	0.81[AFR][1000 genomes]
rs34905469	1.00[AMR][1000 genomes]
rs59619234	1.00[AMR][1000 genomes]
rs60735849	1.00[AMR][1000 genomes]
rs61408379	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61745621	1.00[AMR][1000 genomes]
rs73612927	1.00[AMR][1000 genomes]
rs73612932	1.00[AMR][1000 genomes]
rs73618488	1.00[AMR][1000 genomes]
rs73618491	1.00[AMR][1000 genomes]
rs73620041	1.00[AMR][1000 genomes]
rs73620844	1.00[AMR][1000 genomes]
rs73621723	1.00[AMR][1000 genomes]
rs73622707	1.00[AMR][1000 genomes]
rs73622717	1.00[AMR][1000 genomes]
rs73622721	1.00[AMR][1000 genomes]
rs73623525	1.00[AMR][1000 genomes]
rs73623535	1.00[AMR][1000 genomes]
rs73623537	1.00[AMR][1000 genomes]
rs73623558	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623598	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73625250	1.00[AMR][1000 genomes]
rs73625268	1.00[AMR][1000 genomes]
rs73626554	1.00[AMR][1000 genomes]
rs73626570	1.00[AMR][1000 genomes]
rs73626771	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	nsv521605	chr19:37261810-37483444	ZNF genes & repeats Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv1060155	chr19:37274915-37458788	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv544000	chr19:37274915-37458788	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
10	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	esv3497360	chr19:37290273-37745365	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
12	esv3497361	chr19:37290273-37745365	Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
13	nsv911651	chr19:37300554-37428465	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
14	nsv458568	chr19:37325826-37747108	Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
15	nsv579461	chr19:37325826-37747108	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
16	nsv523848	chr19:37357289-37487632	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37408200-37436400	Weak transcription	Fetal Thymus	thymus
2	chr19:37408200-37440600	Weak transcription	Stomach Mucosa	stomach
3	chr19:37408400-37440600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr19:37408600-37439600	Weak transcription	Fetal Heart	heart
5	chr19:37409000-37444800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr19:37409000-37447400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr19:37410600-37427600	Weak transcription	NH-A	brain
8	chr19:37413600-37427600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr19:37413800-37427400	Weak transcription	Right Ventricle	heart
10	chr19:37413800-37427600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr19:37413800-37427800	Weak transcription	HSMMtube	muscle
12	chr19:37413800-37428000	Weak transcription	HUVEC	blood vessel
13	chr19:37415800-37444600	ZNF genes & repeats	Liver	Liver
14	chr19:37416200-37427800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr19:37418600-37427400	Weak transcription	HSMM	muscle
16	chr19:37419200-37426200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
17	chr19:37419400-37447400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr19:37420600-37443000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
19	chr19:37420600-37447400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
20	chr19:37420600-37447600	ZNF genes & repeats	Adipose Nuclei	Adipose
21	chr19:37421600-37426200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
22	chr19:37421600-37427600	Weak transcription	Fetal Kidney	kidney
23	chr19:37421800-37425600	ZNF genes & repeats	Ovary	ovary
24	chr19:37422200-37425800	Weak transcription	Brain Cingulate Gyrus	brain
25	chr19:37422200-37427800	Weak transcription	Placenta	Placenta
26	chr19:37422400-37427400	Weak transcription	Brain Substantia Nigra	brain
27	chr19:37422400-37427600	Weak transcription	Colon Smooth Muscle	Colon
28	chr19:37422600-37427600	Weak transcription	Brain Germinal Matrix	brain
29	chr19:37422600-37427600	Weak transcription	Fetal Muscle Trunk	muscle
30	chr19:37422600-37427600	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr19:37423000-37427600	Weak transcription	Stomach Smooth Muscle	stomach
32	chr19:37423000-37427600	Weak transcription	NHDF-Ad	bronchial
33	chr19:37423000-37427600	Weak transcription	Osteobl	bone
34	chr19:37423000-37428200	Weak transcription	Fetal Brain Male	brain
35	chr19:37423400-37427600	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr19:37423400-37427800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr19:37423600-37426000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr19:37423600-37427400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr19:37423600-37427600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr19:37423600-37427600	Weak transcription	Brain Anterior Caudate	brain
41	chr19:37423600-37427600	Weak transcription	Fetal Muscle Leg	muscle
42	chr19:37423600-37427600	Weak transcription	Gastric	stomach
43	chr19:37423600-37427600	Weak transcription	Left Ventricle	heart
44	chr19:37423600-37427600	Weak transcription	Pancreas	Pancrea
45	chr19:37423600-37427600	Weak transcription	Psoas Muscle	Psoas
46	chr19:37423600-37427600	Weak transcription	Rectal Smooth Muscle	rectum
47	chr19:37423600-37427800	Weak transcription	Small Intestine	intestine
48	chr19:37423600-37428000	Weak transcription	Thymus	Thymus
49	chr19:37423600-37430000	Weak transcription	Fetal Stomach	stomach
50	chr19:37423800-37427600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links