Variant report

Variant	rs73624829
Chromosome Location	chr19:37684518-37684519
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs34905469	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58634134	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59619234	1.00[AMR][1000 genomes]
rs61564855	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61745621	1.00[AMR][1000 genomes]
rs73620844	1.00[AMR][1000 genomes]
rs73620886	0.83[AFR][1000 genomes]
rs73622707	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73622717	1.00[AMR][1000 genomes]
rs73622721	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73622746	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73622766	0.91[AFR][1000 genomes]
rs73622770	0.91[AFR][1000 genomes]
rs73622774	0.91[AFR][1000 genomes]
rs73622786	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73622787	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623525	1.00[AMR][1000 genomes]
rs73623535	1.00[AMR][1000 genomes]
rs73623537	1.00[AMR][1000 genomes]
rs73623558	1.00[AMR][1000 genomes]
rs73623598	1.00[AMR][1000 genomes]
rs73624806	0.91[AFR][1000 genomes]
rs73624817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73624821	0.88[AFR][1000 genomes]
rs73624840	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73624842	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73624843	1.00[AMR][1000 genomes]
rs73624844	1.00[AMR][1000 genomes]
rs73625250	1.00[AMR][1000 genomes]
rs73625268	1.00[AMR][1000 genomes]
rs73626554	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73626570	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73627713	1.00[AMR][1000 genomes]
rs73627719	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	esv3497360	chr19:37290273-37745365	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
8	esv3497361	chr19:37290273-37745365	Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	nsv458568	chr19:37325826-37747108	Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
10	nsv579461	chr19:37325826-37747108	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
11	nsv911652	chr19:37437106-37774299	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
12	nsv911654	chr19:37487632-37758082	Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
13	nsv911655	chr19:37646745-37758082	ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37668000-37686000	ZNF genes & repeats	Liver	Liver
2	chr19:37672000-37686400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
3	chr19:37672200-37686000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr19:37672800-37686000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr19:37673200-37690600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
6	chr19:37673400-37685400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr19:37673800-37685600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr19:37675000-37701000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr19:37676600-37685200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr19:37676800-37684600	ZNF genes & repeats	Fetal Muscle Leg	muscle
11	chr19:37676800-37686000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
12	chr19:37676800-37686000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
13	chr19:37677000-37684800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
14	chr19:37677000-37685600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
15	chr19:37677000-37686000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr19:37677000-37686000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr19:37677000-37686000	Strong transcription	Placenta Amnion	Placenta Amnion
18	chr19:37677000-37686200	ZNF genes & repeats	Ovary	ovary
19	chr19:37677200-37685400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr19:37677200-37687600	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
21	chr19:37677400-37684600	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
22	chr19:37677400-37685000	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
23	chr19:37678400-37685000	Strong transcription	Brain Anterior Caudate	brain
24	chr19:37678600-37684800	Strong transcription	Brain Cingulate Gyrus	brain
25	chr19:37678600-37686200	ZNF genes & repeats	Fetal Intestine Large	intestine
26	chr19:37678800-37684800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
27	chr19:37679000-37684800	ZNF genes & repeats	Fetal Intestine Small	intestine
28	chr19:37679000-37685400	ZNF genes & repeats	Fetal Stomach	stomach
29	chr19:37679000-37700800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr19:37679800-37686400	Strong transcription	Brain Hippocampus Middle	brain
31	chr19:37680600-37685200	Strong transcription	Skeletal Muscle Male	skeletal muscle
32	chr19:37680600-37700800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr19:37680800-37685400	Strong transcription	Brain Inferior Temporal Lobe	brain
34	chr19:37680800-37685800	Strong transcription	Skeletal Muscle Female	skeletal muscle
35	chr19:37680800-37689800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr19:37680800-37695000	Weak transcription	HSMM	muscle
37	chr19:37680800-37700800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr19:37680800-37700800	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr19:37681000-37684800	Weak transcription	NHDF-Ad	bronchial
40	chr19:37681000-37687400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr19:37681000-37690800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr19:37681000-37695800	Weak transcription	NH-A	brain
43	chr19:37681000-37695800	Weak transcription	NHLF	lung
44	chr19:37681000-37700800	Weak transcription	HSMMtube	muscle
45	chr19:37681000-37700800	Weak transcription	HUVEC	blood vessel
46	chr19:37681000-37701000	Weak transcription	Fetal Heart	heart
47	chr19:37681200-37696600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr19:37681600-37690600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr19:37681800-37684800	Strong transcription	Fetal Muscle Trunk	muscle
50	chr19:37682000-37684800	ZNF genes & repeats	Primary T cells from cord blood	blood

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