Variant report

Variant	rs73684029
Chromosome Location	chr7:27748826-27748827
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs56024856	1.00[AMR][1000 genomes]
rs57384233	1.00[AMR][1000 genomes]
rs58785596	1.00[AMR][1000 genomes]
rs6952618	1.00[AMR][1000 genomes]
rs6966984	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73684034	1.00[AMR][1000 genomes]
rs73684036	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73684038	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73684041	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73684042	1.00[AMR][1000 genomes]
rs73684046	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73684051	1.00[AMR][1000 genomes]
rs73684059	1.00[AMR][1000 genomes]
rs73684064	1.00[AMR][1000 genomes]
rs7789929	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27738200-27749000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr7:27748600-27749000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:27748600-27749000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr7:27748600-27749000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr7:27748600-27750000	Enhancers	Hela-S3	cervix
6	chr7:27748600-27750000	Enhancers	Osteobl	bone
7	chr7:27748600-27750200	Enhancers	NHDF-Ad	bronchial
8	chr7:27748800-27749400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr7:27748800-27749400	Enhancers	Adipose Nuclei	Adipose
10	chr7:27748800-27749600	Enhancers	HMEC	breast
11	chr7:27748800-27749800	Enhancers	Ovary	ovary
12	chr7:27748800-27749800	Enhancers	NHLF	lung
13	chr7:27748800-27750000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr7:27748800-27750000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr7:27748800-27750000	Enhancers	Colon Smooth Muscle	Colon
16	chr7:27748800-27750000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr7:27748800-27750000	Enhancers	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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