Variant report

Variant	rs73684038
Chromosome Location	chr7:27774247-27774248
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs56024856	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57384233	1.00[AMR][1000 genomes]
rs58785596	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6952618	1.00[AMR][1000 genomes]
rs6966984	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73684029	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73684034	1.00[AMR][1000 genomes]
rs73684036	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73684041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73684042	1.00[AMR][1000 genomes]
rs73684046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73684051	1.00[AMR][1000 genomes]
rs73684059	1.00[AMR][1000 genomes]
rs73684064	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7789929	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1028469	chr7:27767795-27939667	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27760000-27778800	Weak transcription	HSMMtube	muscle
2	chr7:27770000-27778600	Weak transcription	Right Atrium	heart
3	chr7:27770600-27775400	Weak transcription	Pancreas	Pancrea
4	chr7:27771200-27775400	Weak transcription	Gastric	stomach
5	chr7:27772800-27778800	Enhancers	Fetal Intestine Small	intestine
6	chr7:27773000-27776000	Enhancers	HepG2	liver
7	chr7:27773600-27778600	Enhancers	Fetal Intestine Large	intestine
8	chr7:27773800-27774600	Enhancers	K562	blood
9	chr7:27774000-27774600	Enhancers	Stomach Mucosa	stomach
10	chr7:27774200-27774400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr7:27774200-27774400	Enhancers	Duodenum Mucosa	Duodenum
12	chr7:27774200-27774400	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr7:27774200-27774600	Enhancers	Small Intestine	intestine
14	chr7:27774200-27775200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr7:27774200-27775600	Enhancers	A549	lung
16	chr7:27774200-27775800	Enhancers	Liver	Liver
17	chr7:27774200-27775800	Enhancers	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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