Variant report

Variant	rs73699996
Chromosome Location	chr8:107729998-107729999
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107727853..107731882-chr8:107733080..107735284,3	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1080966	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13257240	0.83[AMR][1000 genomes]
rs16875042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16875077	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17258979	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2035514	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28921377	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs28921399	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28921400	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28921407	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28924682	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28924693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28924699	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3739323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56171452	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57273012	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57378512	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57400955	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73699979	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73699980	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73699981	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73699998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7831263	0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7843781	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107679200-107738200	Weak transcription	Right Ventricle	heart
2	chr8:107681200-107730200	Weak transcription	Small Intestine	intestine
3	chr8:107690200-107730600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr8:107692000-107738400	Weak transcription	Colon Smooth Muscle	Colon
5	chr8:107694600-107738000	Weak transcription	Fetal Heart	heart
6	chr8:107696000-107737200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr8:107698200-107731000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr8:107707800-107737800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr8:107710400-107735600	Weak transcription	Fetal Intestine Small	intestine
10	chr8:107710400-107738200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr8:107710400-107755400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr8:107711800-107738200	Weak transcription	Brain Angular Gyrus	brain
13	chr8:107717200-107737200	Weak transcription	Brain Hippocampus Middle	brain
14	chr8:107719000-107738200	Weak transcription	NHEK	skin
15	chr8:107719200-107742400	Weak transcription	Stomach Mucosa	stomach
16	chr8:107719600-107731000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr8:107719600-107732400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr8:107719600-107737000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr8:107719600-107737400	Weak transcription	Psoas Muscle	Psoas
20	chr8:107719600-107738000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr8:107719600-107738200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr8:107719600-107738400	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr8:107719600-107739600	Weak transcription	Left Ventricle	heart
24	chr8:107719600-107762400	Weak transcription	Lung	lung
25	chr8:107719600-107765600	Weak transcription	Colonic Mucosa	Colon
26	chr8:107719600-107775200	Weak transcription	Gastric	stomach
27	chr8:107719600-107777800	Weak transcription	Esophagus	oesophagus
28	chr8:107719800-107730200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr8:107719800-107731200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr8:107719800-107738200	Weak transcription	Ovary	ovary
31	chr8:107719800-107753800	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr8:107720000-107732400	Weak transcription	HepG2	liver
33	chr8:107720000-107738200	Weak transcription	HMEC	breast
34	chr8:107720600-107738200	Weak transcription	Aorta	Aorta
35	chr8:107720600-107738200	Weak transcription	Fetal Stomach	stomach
36	chr8:107720600-107738400	Weak transcription	Rectal Smooth Muscle	rectum
37	chr8:107720800-107736000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr8:107721200-107738200	Weak transcription	Fetal Muscle Trunk	muscle
39	chr8:107723200-107738000	Weak transcription	K562	blood
40	chr8:107724000-107732600	Weak transcription	Osteobl	bone
41	chr8:107724000-107737200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr8:107724000-107738000	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr8:107724200-107730400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr8:107724200-107731000	Weak transcription	Primary T cells from cord blood	blood
45	chr8:107724200-107731000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr8:107724200-107731000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr8:107724200-107731000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr8:107724200-107732400	Weak transcription	Fetal Kidney	kidney
49	chr8:107724200-107736000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr8:107724200-107736800	Weak transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links