Variant report

Variant	rs13257240
Chromosome Location	chr8:107653435-107653436
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:107652178..107654915-chr8:107656607..107660694,3	MCF-7	breast:
2	chr8:107650778..107653806-chr8:107654268..107656995,3	MCF-7	breast:
3	chr8:107651808..107653690-chr8:107657768..107660605,2	K562	blood:
4	chr8:107652584..107654414-chr8:107662891..107664399,2	MCF-7	breast:
5	chr8:107645119..107648350-chr8:107651625..107653934,3	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs12676088	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12678473	1.00[ASN][1000 genomes]
rs13251084	1.00[CEU][hapmap]
rs13258304	1.00[ASN][1000 genomes]
rs13264508	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13265873	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13269933	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13272833	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13277585	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13277874	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13279290	1.00[ASN][1000 genomes]
rs16874889	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16875042	0.83[AMR][1000 genomes]
rs17258979	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17342697	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17342815	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17342850	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2035514	1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs2061684	1.00[ASN][1000 genomes]
rs2061685	1.00[ASN][1000 genomes]
rs28921377	0.94[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs28921399	0.94[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs28921400	0.94[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs28921407	0.94[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs28924682	0.83[AMR][1000 genomes]
rs28924693	0.83[AMR][1000 genomes]
rs28924699	0.83[AMR][1000 genomes]
rs35029850	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35783079	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36134646	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3739323	1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs57273012	0.94[AMR][1000 genomes]
rs57378512	0.94[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs57400955	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs58713013	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71522785	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73699979	0.94[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs73699980	0.94[AMR][1000 genomes]
rs73699981	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs73699996	0.83[AMR][1000 genomes]
rs73699998	0.83[AMR][1000 genomes]
rs7843781	0.94[AMR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv6342	chr8:107644092-107688898	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107601600-107669600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107630600-107657200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:107636800-107657400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr8:107643000-107656600	Weak transcription	Stomach Mucosa	stomach
5	chr8:107643400-107658800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr8:107648600-107662400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr8:107653200-107654000	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr8:107653400-107653600	Enhancers	Aorta	Aorta
9	chr8:107653400-107654200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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