Variant report

Variant	rs17342815
Chromosome Location	chr8:107635690-107635691
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:107618803..107621024-chr8:107635376..107637603,2	MCF-7	breast:
2	chr8:107621102..107628249-chr8:107632909..107636528,6	MCF-7	breast:
3	chr8:107635047..107638167-chr8:107668813..107672580,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164830	Chromatin interaction
ENSG00000253582	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12676088	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12678473	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13257240	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13258304	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13264508	1.00[ASN][1000 genomes]
rs13265873	1.00[ASN][1000 genomes]
rs13269933	1.00[ASN][1000 genomes]
rs13272833	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13277585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13277874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13279290	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16874889	1.00[ASN][1000 genomes]
rs17258979	0.81[ASN][1000 genomes]
rs17342697	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17342850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2035514	1.00[CHB][hapmap]
rs2061684	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2061685	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28921377	0.81[ASN][1000 genomes]
rs28921399	0.81[ASN][1000 genomes]
rs28921400	0.81[ASN][1000 genomes]
rs28921407	0.81[ASN][1000 genomes]
rs35029850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35783079	1.00[ASN][1000 genomes]
rs36134646	1.00[ASN][1000 genomes]
rs3739323	1.00[CHB][hapmap]
rs57378512	0.81[ASN][1000 genomes]
rs57400955	0.81[ASN][1000 genomes]
rs58713013	1.00[ASN][1000 genomes]
rs71522785	1.00[ASN][1000 genomes]
rs73699979	0.81[ASN][1000 genomes]
rs73699981	0.81[ASN][1000 genomes]
rs7843781	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107601600-107669600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107617200-107641000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:107620400-107653400	Weak transcription	Aorta	Aorta
4	chr8:107630600-107643400	Weak transcription	Gastric	stomach
5	chr8:107630600-107657200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:107630800-107635800	Weak transcription	Fetal Kidney	kidney
7	chr8:107631000-107636200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr8:107633600-107635800	Weak transcription	Liver	Liver
9	chr8:107634200-107636200	Enhancers	HepG2	liver
10	chr8:107634200-107636600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr8:107634800-107636000	Weak transcription	Stomach Mucosa	stomach
12	chr8:107635200-107636400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr8:107635400-107636800	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr8:107635600-107638000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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