Variant report

Variant	rs12676088
Chromosome Location	chr8:107641496-107641497
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107639957..107642921-chr8:107668793..107673029,5	MCF-7	breast:
2	chr8:107639670..107643693-chr8:107648577..107651527,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253582	Chromatin interaction
ENSG00000164830	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12678473	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13257240	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13258304	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13264508	1.00[ASN][1000 genomes]
rs13265873	1.00[ASN][1000 genomes]
rs13269933	1.00[ASN][1000 genomes]
rs13272833	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13277585	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13277874	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13279290	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16874889	1.00[ASN][1000 genomes]
rs17258979	0.81[ASN][1000 genomes]
rs17342697	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17342815	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17342850	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2061684	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2061685	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28921377	0.81[ASN][1000 genomes]
rs28921399	0.81[ASN][1000 genomes]
rs28921400	0.81[ASN][1000 genomes]
rs28921407	0.81[ASN][1000 genomes]
rs35029850	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35783079	1.00[ASN][1000 genomes]
rs36134646	1.00[ASN][1000 genomes]
rs57378512	0.81[ASN][1000 genomes]
rs57400955	0.81[ASN][1000 genomes]
rs58713013	1.00[ASN][1000 genomes]
rs71522785	1.00[ASN][1000 genomes]
rs73699979	0.81[ASN][1000 genomes]
rs73699981	0.81[ASN][1000 genomes]
rs7843781	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107601600-107669600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107620400-107653400	Weak transcription	Aorta	Aorta
3	chr8:107630600-107643400	Weak transcription	Gastric	stomach
4	chr8:107630600-107657200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:107636800-107657400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr8:107637200-107648400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:107637400-107642600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr8:107638000-107642200	Weak transcription	Stomach Mucosa	stomach
9	chr8:107639800-107643200	Enhancers	HepG2	liver
10	chr8:107640800-107642800	Enhancers	Fetal Lung	lung
11	chr8:107641000-107641800	Flanking Active TSS	Liver	Liver
12	chr8:107641000-107642000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:107641000-107643200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr8:107641200-107641600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr8:107641200-107641800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr8:107641200-107641800	Enhancers	NHDF-Ad	bronchial
17	chr8:107641200-107642200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr8:107641400-107641800	Enhancers	Brain Angular Gyrus	brain

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