Variant report

Variant	rs16874889
Chromosome Location	chr8:107620183-107620184
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:107617562..107623335-chr8:107668202..107671640,8	MCF-7	breast:
2	chr8:107612963..107615738-chr8:107617807..107620610,3	MCF-7	breast:
3	chr8:107618803..107621024-chr8:107635376..107637603,2	MCF-7	breast:
4	chr8:107616759..107623874-chr8:107668754..107672668,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253582	Chromatin interaction
ENSG00000164830	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12676088	1.00[ASN][1000 genomes]
rs12678473	1.00[ASN][1000 genomes]
rs13257240	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13258304	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13264508	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13265873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13269933	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13272833	1.00[ASN][1000 genomes]
rs13277585	1.00[ASN][1000 genomes]
rs13277874	1.00[ASN][1000 genomes]
rs13279290	1.00[ASN][1000 genomes]
rs17258979	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17342697	1.00[ASN][1000 genomes]
rs17342815	1.00[ASN][1000 genomes]
rs17342850	1.00[ASN][1000 genomes]
rs2061684	1.00[ASN][1000 genomes]
rs2061685	1.00[ASN][1000 genomes]
rs28921377	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs28921399	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs28921400	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs28921407	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs35029850	1.00[ASN][1000 genomes]
rs35783079	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36134646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57273012	0.88[AMR][1000 genomes]
rs57378512	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs57400955	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs58713013	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71522785	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73699979	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs73699980	0.88[AMR][1000 genomes]
rs73699981	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7843781	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107512400-107620200	Weak transcription	Aorta	Aorta
2	chr8:107601600-107669600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:107616000-107620800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr8:107616800-107620200	Weak transcription	Fetal Intestine Large	intestine
5	chr8:107616800-107624200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr8:107617000-107623400	Weak transcription	Right Atrium	heart
7	chr8:107617200-107623600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr8:107617200-107641000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:107618000-107623800	Enhancers	Stomach Mucosa	stomach
10	chr8:107618200-107621400	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr8:107618400-107621800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr8:107618600-107620600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr8:107618600-107621200	Enhancers	Liver	Liver
14	chr8:107618800-107620200	Enhancers	Brain Cingulate Gyrus	brain
15	chr8:107618800-107620400	Enhancers	HMEC	breast
16	chr8:107618800-107620600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr8:107618800-107620600	Enhancers	NHEK	skin
18	chr8:107618800-107621400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr8:107619000-107620200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr8:107619000-107620600	Enhancers	Stomach Smooth Muscle	stomach
21	chr8:107619000-107620800	Enhancers	Colon Smooth Muscle	Colon
22	chr8:107619200-107621200	Enhancers	Duodenum Mucosa	Duodenum
23	chr8:107619400-107620600	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr8:107619400-107620600	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr8:107619400-107620600	Enhancers	Gastric	stomach
26	chr8:107619400-107620800	Flanking Active TSS	HepG2	liver
27	chr8:107619400-107621000	Enhancers	Placenta	Placenta
28	chr8:107619400-107621400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr8:107619400-107621400	Flanking Active TSS	GM12878-XiMat	blood
30	chr8:107619600-107620600	Enhancers	Esophagus	oesophagus
31	chr8:107619800-107620400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr8:107619800-107620800	Weak transcription	Brain Hippocampus Middle	brain
33	chr8:107619800-107621000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr8:107619800-107621000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr8:107619800-107621200	Weak transcription	Fetal Lung	lung
36	chr8:107619800-107622000	Enhancers	Rectal Mucosa Donor 31	rectum
37	chr8:107619800-107622400	Weak transcription	Brain Angular Gyrus	brain
38	chr8:107619800-107622600	Weak transcription	Fetal Kidney	kidney
39	chr8:107619800-107625000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr8:107620000-107620400	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr8:107620000-107620400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr8:107620000-107620600	Enhancers	Colonic Mucosa	Colon
43	chr8:107620000-107620800	Enhancers	Fetal Thymus	thymus
44	chr8:107620000-107621400	Enhancers	Rectal Mucosa Donor 29	rectum
45	chr8:107620000-107623000	Weak transcription	Fetal Heart	heart
46	chr8:107620000-107629800	Weak transcription	Primary T cells from cord blood	blood

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