Variant report

Variant	rs57273012
Chromosome Location	chr8:107702900-107702901
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107700975..107704307-chr8:107704441..107706553,4	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1080966	1.00[EUR][1000 genomes]
rs13257240	0.94[AMR][1000 genomes]
rs13264508	0.88[AMR][1000 genomes]
rs13265873	0.88[AMR][1000 genomes]
rs13269933	0.82[AMR][1000 genomes]
rs16874889	0.88[AMR][1000 genomes]
rs16875042	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16875077	1.00[EUR][1000 genomes]
rs17258979	0.94[AMR][1000 genomes]
rs2035514	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28921377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28921399	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28921400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28921407	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28924682	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28924693	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28924699	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35783079	0.88[AMR][1000 genomes]
rs36134646	0.88[AMR][1000 genomes]
rs3739323	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56171452	1.00[EUR][1000 genomes]
rs57378512	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57400955	0.94[AMR][1000 genomes]
rs58713013	0.88[AMR][1000 genomes]
rs71522785	0.88[AMR][1000 genomes]
rs73699979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73699980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73699981	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73699996	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73699998	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7831263	0.82[AMR][1000 genomes]
rs7843781	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107672200-107718800	Weak transcription	Psoas Muscle	Psoas
2	chr8:107672400-107718600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr8:107677600-107709400	Weak transcription	Pancreas	Pancrea
4	chr8:107677600-107718800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr8:107679200-107738200	Weak transcription	Right Ventricle	heart
6	chr8:107681200-107730200	Weak transcription	Small Intestine	intestine
7	chr8:107683800-107718800	Weak transcription	Hela-S3	cervix
8	chr8:107686000-107709200	Weak transcription	Gastric	stomach
9	chr8:107686200-107709200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr8:107686400-107709000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr8:107686400-107709000	Weak transcription	Esophagus	oesophagus
12	chr8:107686400-107709000	Weak transcription	Spleen	Spleen
13	chr8:107686600-107709000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr8:107686600-107709000	Weak transcription	Fetal Stomach	stomach
15	chr8:107686600-107711800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr8:107687200-107707600	Weak transcription	Fetal Intestine Small	intestine
17	chr8:107687200-107709000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr8:107688000-107713000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr8:107688600-107709200	Weak transcription	Aorta	Aorta
20	chr8:107688600-107718600	Weak transcription	Stomach Mucosa	stomach
21	chr8:107690200-107730600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr8:107690400-107709200	Weak transcription	Ovary	ovary
23	chr8:107691600-107718600	Weak transcription	K562	blood
24	chr8:107692000-107738400	Weak transcription	Colon Smooth Muscle	Colon
25	chr8:107692600-107706400	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr8:107692800-107725800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr8:107693000-107709800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr8:107693600-107706600	Strong transcription	Liver	Liver
29	chr8:107694600-107719000	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr8:107694600-107738000	Weak transcription	Fetal Heart	heart
31	chr8:107695000-107725800	Weak transcription	NHLF	lung
32	chr8:107695800-107718600	Weak transcription	NHEK	skin
33	chr8:107696000-107718800	Weak transcription	A549	lung
34	chr8:107696000-107737200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr8:107696200-107718800	Weak transcription	Brain Cingulate Gyrus	brain
36	chr8:107697200-107709400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr8:107697400-107709200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr8:107697800-107704400	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr8:107697800-107704400	Weak transcription	Stomach Smooth Muscle	stomach
40	chr8:107697800-107705000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr8:107697800-107707800	Weak transcription	Placenta	Placenta
42	chr8:107697800-107718400	Weak transcription	HUVEC	blood vessel
43	chr8:107697800-107718800	Weak transcription	Osteobl	bone
44	chr8:107697800-107719000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr8:107697800-107723800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr8:107698000-107705000	Weak transcription	HMEC	breast
47	chr8:107698000-107709400	Weak transcription	Left Ventricle	heart
48	chr8:107698000-107718600	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr8:107698000-107718600	Weak transcription	NH-A	brain
50	chr8:107698000-107719000	Weak transcription	Fetal Kidney	kidney

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