Variant report

Variant	rs3739323
Chromosome Location	chr8:107751549-107751550
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10091390	1.00[YRI][hapmap]
rs10104941	1.00[YRI][hapmap]
rs10108240	1.00[YRI][hapmap]
rs10110610	1.00[YRI][hapmap]
rs1080966	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12543558	1.00[YRI][hapmap]
rs13257240	0.83[AMR][1000 genomes]
rs13272833	1.00[CHB][hapmap]
rs16875042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16875077	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17258979	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17342815	1.00[CHB][hapmap]
rs2035514	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28921377	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs28921399	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28921400	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28921407	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28924682	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28924693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28924699	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56171452	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57273012	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57378512	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57400955	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73699979	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73699980	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73699981	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73699996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73699998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7461484	1.00[YRI][hapmap]
rs7831263	0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7843781	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107710400-107755400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107719600-107762400	Weak transcription	Lung	lung
3	chr8:107719600-107765600	Weak transcription	Colonic Mucosa	Colon
4	chr8:107719600-107775200	Weak transcription	Gastric	stomach
5	chr8:107719600-107777800	Weak transcription	Esophagus	oesophagus
6	chr8:107719800-107753800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr8:107736200-107751600	Weak transcription	Primary B cells from peripheral blood	blood
8	chr8:107738000-107755400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr8:107738600-107751600	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr8:107738600-107755400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr8:107738600-107755400	Weak transcription	Fetal Intestine Small	intestine
12	chr8:107738800-107757000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr8:107739000-107752600	Weak transcription	Fetal Intestine Large	intestine
14	chr8:107739000-107753000	Weak transcription	Colon Smooth Muscle	Colon
15	chr8:107739000-107754200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr8:107739000-107758000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr8:107739000-107775200	Weak transcription	A549	lung
18	chr8:107739200-107751600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr8:107739200-107752000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr8:107739200-107752600	Weak transcription	Fetal Kidney	kidney
21	chr8:107739200-107752600	Weak transcription	Fetal Thymus	thymus
22	chr8:107739200-107753200	Weak transcription	NHLF	lung
23	chr8:107739200-107760800	Weak transcription	Fetal Stomach	stomach
24	chr8:107739600-107751600	Weak transcription	Liver	Liver
25	chr8:107740000-107751600	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr8:107740000-107751600	Weak transcription	Primary hematopoietic stem cells	blood
27	chr8:107740000-107751600	Weak transcription	Left Ventricle	heart
28	chr8:107740000-107756200	Weak transcription	Psoas Muscle	Psoas
29	chr8:107740000-107759600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr8:107740000-107775200	Weak transcription	Ovary	ovary
31	chr8:107740200-107752400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr8:107740200-107754400	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr8:107740200-107755400	Weak transcription	Thymus	Thymus
34	chr8:107740200-107767400	Weak transcription	K562	blood
35	chr8:107740200-107783800	Weak transcription	Fetal Brain Male	brain
36	chr8:107740400-107751800	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr8:107740400-107752600	Weak transcription	Brain Hippocampus Middle	brain
38	chr8:107740400-107755200	Weak transcription	Brain Angular Gyrus	brain
39	chr8:107740800-107751600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr8:107740800-107751600	Weak transcription	Fetal Lung	lung
41	chr8:107740800-107775200	Weak transcription	Brain Substantia Nigra	brain
42	chr8:107741000-107768200	Weak transcription	Brain Germinal Matrix	brain
43	chr8:107741600-107751600	Weak transcription	Dnd41	blood
44	chr8:107741600-107754400	Weak transcription	Fetal Brain Female	brain
45	chr8:107742800-107751600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr8:107742800-107751600	Weak transcription	Primary B cells from cord blood	blood
47	chr8:107746000-107754600	Weak transcription	Rectal Smooth Muscle	rectum
48	chr8:107746800-107751600	Weak transcription	Adipose Nuclei	Adipose
49	chr8:107746800-107752800	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr8:107746800-107753400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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