Variant report

Variant	rs13264508
Chromosome Location	chr8:107624197-107624198
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107621102..107628249-chr8:107632909..107636528,6	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12676088	1.00[ASN][1000 genomes]
rs12678473	1.00[ASN][1000 genomes]
rs13257240	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13258304	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13265873	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13269933	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13272833	1.00[ASN][1000 genomes]
rs13277585	1.00[ASN][1000 genomes]
rs13277874	1.00[ASN][1000 genomes]
rs13279290	1.00[ASN][1000 genomes]
rs16874889	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17258979	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17342697	1.00[ASN][1000 genomes]
rs17342815	1.00[ASN][1000 genomes]
rs17342850	1.00[ASN][1000 genomes]
rs2061684	1.00[ASN][1000 genomes]
rs2061685	1.00[ASN][1000 genomes]
rs28921377	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs28921399	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs28921400	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs28921407	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs35029850	1.00[ASN][1000 genomes]
rs35783079	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36134646	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57273012	0.88[AMR][1000 genomes]
rs57378512	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs57400955	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs58713013	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71522785	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73699979	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs73699980	0.88[AMR][1000 genomes]
rs73699981	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7843781	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107601600-107669600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107616800-107624200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr8:107617200-107641000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:107619800-107625000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr8:107620000-107629800	Weak transcription	Primary T cells from cord blood	blood
6	chr8:107620400-107653400	Weak transcription	Aorta	Aorta
7	chr8:107621200-107624400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr8:107621200-107627600	Weak transcription	Osteobl	bone
9	chr8:107621200-107629800	Weak transcription	Duodenum Mucosa	Duodenum
10	chr8:107621400-107633400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr8:107621600-107629600	Weak transcription	HepG2	liver
12	chr8:107622200-107624800	Weak transcription	GM12878-XiMat	blood
13	chr8:107623200-107624400	Enhancers	Liver	Liver
14	chr8:107623800-107624400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr8:107623800-107626600	Weak transcription	Stomach Mucosa	stomach
16	chr8:107623800-107630000	Weak transcription	HMEC	breast
17	chr8:107624000-107630200	Weak transcription	Gastric	stomach

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