Variant report

Variant	rs73722961
Chromosome Location	chr6:11407321-11407322
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10484453	0.85[ASN][1000 genomes]
rs10484454	0.85[ASN][1000 genomes]
rs12524463	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12525329	0.88[ASN][1000 genomes]
rs12525704	0.88[ASN][1000 genomes]
rs12525719	0.88[ASN][1000 genomes]
rs12526759	0.81[ASN][1000 genomes]
rs12527813	0.85[ASN][1000 genomes]
rs16871294	0.81[ASN][1000 genomes]
rs16871306	0.85[ASN][1000 genomes]
rs4607428	0.85[ASN][1000 genomes]
rs7742703	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7752886	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11399000-11410800	Weak transcription	Adipose Nuclei	Adipose
2	chr6:11405200-11412400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:11405400-11412000	Weak transcription	Fetal Kidney	kidney
4	chr6:11405400-11419400	Weak transcription	Aorta	Aorta
5	chr6:11405600-11410800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:11405800-11409800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr6:11405800-11411000	Weak transcription	GM12878-XiMat	blood
8	chr6:11405800-11412400	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr6:11406000-11412400	Weak transcription	Spleen	Spleen
10	chr6:11406600-11407600	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr6:11406600-11410800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr6:11406600-11412400	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr6:11406600-11414600	Weak transcription	Primary B cells from cord blood	blood
14	chr6:11406800-11410800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:11406800-11410800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:11406800-11411200	Weak transcription	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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