Variant report

Variant	rs12527813
Chromosome Location	chr6:11403028-11403029
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10484453	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10484454	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12524463	0.92[ASN][1000 genomes]
rs12525329	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12525704	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12525719	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12525737	0.84[EUR][1000 genomes]
rs12526759	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16871291	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16871294	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16871306	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4607428	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6903648	0.85[ASN][1000 genomes]
rs73366863	0.85[ASN][1000 genomes]
rs73722961	0.85[ASN][1000 genomes]
rs7742703	0.92[ASN][1000 genomes]
rs7752886	0.92[ASN][1000 genomes]
rs7760294	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11394000-11405600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr6:11394800-11403600	Weak transcription	Primary B cells from cord blood	blood
3	chr6:11398800-11403400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:11398800-11405200	Weak transcription	Spleen	Spleen
5	chr6:11399000-11403600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:11399000-11410800	Weak transcription	Adipose Nuclei	Adipose
7	chr6:11399400-11403600	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr6:11399600-11403200	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr6:11400000-11403200	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr6:11402400-11403400	Weak transcription	HepG2	liver
11	chr6:11402400-11403600	Weak transcription	Lung	lung
12	chr6:11402800-11406800	Enhancers	Primary B cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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