Variant report

Variant	rs7760294
Chromosome Location	chr6:11370641-11370642
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10484453	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10484454	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12524463	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12525329	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12525704	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12525719	0.88[ASN][1000 genomes]
rs12526759	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12527813	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16871291	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16871294	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16871306	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4607428	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6903648	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6935901	0.84[YRI][hapmap]
rs73366863	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7742703	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7746976	1.00[CHB][hapmap]
rs7752886	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs926314	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11355200-11370800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:11357200-11371200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr6:11364600-11371200	Enhancers	HUVEC	blood vessel
4	chr6:11364600-11381200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr6:11364800-11370800	Weak transcription	Placenta	Placenta
6	chr6:11365600-11374400	Weak transcription	Stomach Mucosa	stomach
7	chr6:11365600-11374800	Weak transcription	Primary hematopoietic stem cells	blood
8	chr6:11366800-11371000	Enhancers	Fetal Kidney	kidney
9	chr6:11367000-11370800	Weak transcription	Esophagus	oesophagus
10	chr6:11367600-11372000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr6:11368000-11370800	Weak transcription	Right Ventricle	heart
12	chr6:11368000-11371000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:11368400-11370800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:11368400-11370800	Weak transcription	Duodenum Mucosa	Duodenum
15	chr6:11368400-11371400	Weak transcription	Fetal Intestine Small	intestine
16	chr6:11368400-11371800	Enhancers	HepG2	liver
17	chr6:11368400-11373800	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr6:11368400-11374400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr6:11368400-11374400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr6:11368400-11374600	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr6:11368600-11370800	Weak transcription	Fetal Muscle Trunk	muscle
22	chr6:11368800-11376800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:11369000-11370800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr6:11369000-11371600	Strong transcription	Primary T cells from cord blood	blood
25	chr6:11369000-11380200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr6:11369200-11371600	Genic enhancers	Primary B cells from peripheral blood	blood
27	chr6:11369200-11374400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr6:11369200-11374600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr6:11369400-11370800	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr6:11369400-11371200	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr6:11369400-11373600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr6:11369800-11370800	Enhancers	Fetal Lung	lung
33	chr6:11369800-11371000	Enhancers	Brain Hippocampus Middle	brain
34	chr6:11370000-11371000	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr6:11370000-11371000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr6:11370000-11371000	Enhancers	Brain Anterior Caudate	brain
37	chr6:11370000-11371000	Enhancers	Brain Substantia Nigra	brain
38	chr6:11370000-11371200	Enhancers	Brain Cingulate Gyrus	brain
39	chr6:11370000-11372000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
40	chr6:11370200-11370800	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr6:11370200-11371000	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr6:11370200-11371000	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr6:11370200-11371200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr6:11370200-11371200	Enhancers	Adipose Nuclei	Adipose
45	chr6:11370200-11371200	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr6:11370200-11371200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
47	chr6:11370200-11371400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr6:11370200-11371800	Enhancers	Primary neutrophils fromperipheralblood	blood
49	chr6:11370200-11374000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr6:11370200-11374400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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