Variant report

Variant	rs7742703
Chromosome Location	chr6:11411838-11411839
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11386757..11389915-chr6:11410069..11412647,3	MCF-7	breast:
2	chr6:11229922..11234167-chr6:11411662..11415515,7	MCF-7	breast:
3	chr6:11387321..11394874-chr6:11409302..11416244,8	MCF-7	breast:
4	chr6:11231617..11234396-chr6:11409918..11412619,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111859	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10484453	0.92[ASN][1000 genomes]
rs10484454	0.92[ASN][1000 genomes]
rs12524463	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12525329	0.96[ASN][1000 genomes]
rs12525704	0.96[ASN][1000 genomes]
rs12525719	0.96[ASN][1000 genomes]
rs12526759	0.88[ASN][1000 genomes]
rs12527813	0.92[ASN][1000 genomes]
rs16871291	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs16871294	0.88[ASN][1000 genomes]
rs16871306	0.92[ASN][1000 genomes]
rs4607428	0.92[ASN][1000 genomes]
rs6903648	0.85[ASN][1000 genomes]
rs73366863	0.85[ASN][1000 genomes]
rs73722961	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7752886	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760294	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs926314	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11405200-11412400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:11405400-11412000	Weak transcription	Fetal Kidney	kidney
3	chr6:11405400-11419400	Weak transcription	Aorta	Aorta
4	chr6:11405800-11412400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr6:11406000-11412400	Weak transcription	Spleen	Spleen
6	chr6:11406600-11412400	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr6:11406600-11414600	Weak transcription	Primary B cells from cord blood	blood
8	chr6:11409600-11412600	Enhancers	HUVEC	blood vessel
9	chr6:11409800-11412600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr6:11410600-11412000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr6:11410800-11413400	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr6:11410800-11413800	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr6:11411000-11412200	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr6:11411000-11412400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:11411000-11412400	Enhancers	GM12878-XiMat	blood
16	chr6:11411000-11415200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:11411200-11412800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:11411200-11413800	Enhancers	Primary B cells from peripheral blood	blood
19	chr6:11411200-11413800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr6:11411200-11415000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr6:11411200-11415000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr6:11411200-11415600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr6:11411400-11412000	Weak transcription	Adipose Nuclei	Adipose
24	chr6:11411400-11412400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr6:11411400-11412400	Weak transcription	A549	lung
26	chr6:11411600-11417000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:11411800-11412200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:11411800-11412200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr6:11411800-11412600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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