Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:11386757..11389915-chr6:11410069..11412647,3	MCF-7	breast:
2	chr6:11409800..11411371-chr6:11421171..11422724,2	MCF-7	breast:
3	chr6:11387321..11394874-chr6:11409302..11416244,8	MCF-7	breast:
4	chr6:11231617..11234396-chr6:11409918..11412619,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111859	Chromatin interaction

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10484453	0.92[ASN][1000 genomes]
rs10484454	0.92[ASN][1000 genomes]
rs12525329	0.96[ASN][1000 genomes]
rs12525704	0.96[ASN][1000 genomes]
rs12525719	0.96[ASN][1000 genomes]
rs12526759	0.88[ASN][1000 genomes]
rs12527813	0.92[ASN][1000 genomes]
rs16871291	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs16871294	0.88[ASN][1000 genomes]
rs16871306	0.92[ASN][1000 genomes]
rs4607428	0.92[ASN][1000 genomes]
rs6903648	0.85[ASN][1000 genomes]
rs73366863	0.85[ASN][1000 genomes]
rs73722961	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7742703	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7752886	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760294	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs926314	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11405200-11412400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:11405400-11412000	Weak transcription	Fetal Kidney	kidney
3	chr6:11405400-11419400	Weak transcription	Aorta	Aorta
4	chr6:11405800-11411000	Weak transcription	GM12878-XiMat	blood
5	chr6:11405800-11412400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr6:11406000-11412400	Weak transcription	Spleen	Spleen
7	chr6:11406600-11412400	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr6:11406600-11414600	Weak transcription	Primary B cells from cord blood	blood
9	chr6:11406800-11411200	Weak transcription	Primary B cells from peripheral blood	blood
10	chr6:11408000-11411000	Weak transcription	A549	lung
11	chr6:11409600-11412600	Enhancers	HUVEC	blood vessel
12	chr6:11409800-11412600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr6:11410600-11411000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:11410600-11412000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr6:11410800-11411400	Enhancers	Adipose Nuclei	Adipose
16	chr6:11410800-11411400	Enhancers	Stomach Mucosa	stomach
17	chr6:11410800-11411600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:11410800-11411600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:11410800-11413400	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr6:11410800-11413800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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