Variant report

Variant	rs73725267
Chromosome Location	chr6:16885861-16885862
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10214621	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10214623	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10214624	1.00[AMR][1000 genomes]
rs10214782	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1240832	1.00[EUR][1000 genomes]
rs1240836	1.00[EUR][1000 genomes]
rs1240837	1.00[EUR][1000 genomes]
rs1240838	1.00[EUR][1000 genomes]
rs1240840	1.00[EUR][1000 genomes]
rs1776473	1.00[EUR][1000 genomes]
rs2759210	1.00[EUR][1000 genomes]
rs2797806	1.00[EUR][1000 genomes]
rs41390248	1.00[EUR][1000 genomes]
rs6934167	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73725249	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73725253	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9464946	0.82[AFR][1000 genomes]
rs9464947	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9464949	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9464954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9477231	1.00[AMR][1000 genomes]
rs9477236	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9477240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1837694	chr6:16866948-16885869	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv1842967	chr6:16866948-16885869	Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2758037	chr6:16873271-16912538	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv2759409	chr6:16873271-16912538	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv3472182	chr6:16882973-16887971	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	esv1846921	chr6:16884088-16885869	ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3472176	chr6:16884613-16886366	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3472178	chr6:16884834-16886193	Flanking Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3472177	chr6:16884874-16886174	Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3472179	chr6:16884883-16886122	Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3472181	chr6:16884890-16886170	Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3472180	chr6:16884951-16886099	Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3472183	chr6:16884966-16886097	ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv19373	chr6:16884994-16886065	Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv820755	chr6:16884994-16886065	ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv601015	chr6:16885017-16885869	Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv601016	chr6:16885017-16892412	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
18	nsv601020	chr6:16885068-16885869	Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv601023	chr6:16885123-16885869	Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv601025	chr6:16885124-16885869	ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv601026	chr6:16885309-16885869	Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:16884600-16886000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr6:16884600-16886000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr6:16884600-16886400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr6:16884600-16886400	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr6:16885000-16886600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
6	chr6:16885600-16886000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell

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