Variant report

Variant	rs9464949
Chromosome Location	chr6:16843520-16843521
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10214621	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10214623	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10214624	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10214782	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6934167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73725249	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73725253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73725267	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9464946	0.93[AFR][1000 genomes]
rs9464947	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9464954	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9477231	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9477236	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9477240	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015992	chr6:16469059-16846847	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv538148	chr6:16469059-16846847	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:16837400-16849000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:16837800-16849600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:16838600-16849600	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:16838800-16849600	Weak transcription	Brain Germinal Matrix	brain
5	chr6:16840000-16843600	Enhancers	Placenta Amnion	Placenta Amnion
6	chr6:16841600-16849000	Weak transcription	NH-A	brain
7	chr6:16841800-16849800	Weak transcription	Fetal Brain Female	brain
8	chr6:16842000-16846600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:16842200-16844000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:16842400-16849600	Weak transcription	NHEK	skin
11	chr6:16842600-16844200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:16842600-16849200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:16843000-16844800	Enhancers	Fetal Lung	lung
14	chr6:16843400-16843600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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