Variant report
| Variant | rs9464947 |
|---|---|
| Chromosome Location | chr6:16814753-16814754 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:16812993..16815181-chr6:16818236..16820010,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs10214621 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10214623 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10214624 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10214782 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6934167 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73725249 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73725253 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73725267 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9464946 | 0.96[AFR][1000 genomes] |
| rs9464949 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9464954 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9477231 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9477236 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9477240 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532022 | chr6:16448152-16825567 | ZNF genes & repeats Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv1031423 | chr6:16467215-16823725 | Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 3 | nsv1015992 | chr6:16469059-16846847 | Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 4 | nsv538148 | chr6:16469059-16846847 | Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:16813800-16816600 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
