Variant report

Variant	rs73737138
Chromosome Location	chr6:48885997-48885998
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs55681436	1.00[AMR][1000 genomes]
rs55691537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55717632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57476901	1.00[AMR][1000 genomes]
rs60528836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60943231	1.00[AMR][1000 genomes]
rs61204067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6932417	1.00[AMR][1000 genomes]
rs73737124	1.00[AMR][1000 genomes]
rs73737129	1.00[AMR][1000 genomes]
rs73737130	0.81[AFR][1000 genomes]
rs73737131	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73737132	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73737137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73737139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73737140	1.00[AMR][1000 genomes]
rs73737141	1.00[AMR][1000 genomes]
rs73737142	1.00[AMR][1000 genomes]
rs73737143	1.00[AMR][1000 genomes]
rs73737145	1.00[AMR][1000 genomes]
rs73737148	1.00[AMR][1000 genomes]
rs73737157	1.00[AMR][1000 genomes]
rs7750441	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7753978	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949690	chr6:48595821-49289855	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv603037	chr6:48804862-48995221	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:48832200-48944000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:48884400-48886000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr6:48884400-48886000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr6:48884400-48886000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr6:48884400-48887400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr6:48885400-48887200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr6:48885800-48886000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr6:48885800-48886000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr6:48885800-48887000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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