Variant report

Variant	rs7753978
Chromosome Location	chr6:49024359-49024360
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs55681436	1.00[AMR][1000 genomes]
rs55691537	1.00[AMR][1000 genomes]
rs57476901	1.00[AMR][1000 genomes]
rs60528836	1.00[AMR][1000 genomes]
rs61204067	1.00[AMR][1000 genomes]
rs6932417	1.00[AMR][1000 genomes]
rs73737137	1.00[AMR][1000 genomes]
rs73737138	1.00[AMR][1000 genomes]
rs73737139	1.00[AMR][1000 genomes]
rs73737140	1.00[AMR][1000 genomes]
rs73737141	1.00[AMR][1000 genomes]
rs73737142	1.00[AMR][1000 genomes]
rs73737143	1.00[AMR][1000 genomes]
rs73737145	1.00[AMR][1000 genomes]
rs73737148	1.00[AMR][1000 genomes]
rs73737157	1.00[AMR][1000 genomes]
rs73737163	1.00[AFR][1000 genomes]
rs73737164	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949690	chr6:48595821-49289855	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv603049	chr6:48931959-49169337	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv885880	chr6:48975662-49102186	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:49023200-49025000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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