Variant report
| Variant | rs73737148 |
|---|---|
| Chromosome Location | chr6:48982472-48982473 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:48981721..48984631-chr6:48985327..48987598,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs55681436 | 1.00[AMR][1000 genomes] |
| rs55691537 | 1.00[AMR][1000 genomes] |
| rs55717632 | 1.00[AMR][1000 genomes] |
| rs57476901 | 1.00[AMR][1000 genomes] |
| rs60528836 | 1.00[AMR][1000 genomes] |
| rs61204067 | 1.00[AMR][1000 genomes] |
| rs6932417 | 1.00[AMR][1000 genomes] |
| rs73737132 | 1.00[AMR][1000 genomes] |
| rs73737137 | 1.00[AMR][1000 genomes] |
| rs73737138 | 1.00[AMR][1000 genomes] |
| rs73737139 | 1.00[AMR][1000 genomes] |
| rs73737140 | 1.00[AMR][1000 genomes] |
| rs73737141 | 1.00[AMR][1000 genomes] |
| rs73737142 | 1.00[AMR][1000 genomes] |
| rs73737143 | 1.00[AMR][1000 genomes] |
| rs73737145 | 1.00[AMR][1000 genomes] |
| rs73737157 | 1.00[AMR][1000 genomes] |
| rs7750441 | 1.00[AMR][1000 genomes] |
| rs7753978 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949690 | chr6:48595821-49289855 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv603037 | chr6:48804862-48995221 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv603049 | chr6:48931959-49169337 | Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv885880 | chr6:48975662-49102186 | Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Active TSS | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:48972800-48993000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
