Variant report
| Variant | rs73737140 |
|---|---|
| Chromosome Location | chr6:48930267-48930268 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:48923639..48925740-chr6:48930258..48932509,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs55681436 | 1.00[AMR][1000 genomes] |
| rs55691537 | 1.00[AMR][1000 genomes] |
| rs55717632 | 1.00[AMR][1000 genomes] |
| rs57476901 | 1.00[AMR][1000 genomes] |
| rs60528836 | 1.00[AMR][1000 genomes] |
| rs61204067 | 1.00[AMR][1000 genomes] |
| rs6932417 | 1.00[AMR][1000 genomes] |
| rs73737131 | 1.00[AMR][1000 genomes] |
| rs73737132 | 1.00[AMR][1000 genomes] |
| rs73737137 | 1.00[AMR][1000 genomes] |
| rs73737138 | 1.00[AMR][1000 genomes] |
| rs73737139 | 1.00[AMR][1000 genomes] |
| rs73737141 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73737142 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73737143 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73737145 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73737148 | 1.00[AMR][1000 genomes] |
| rs73737157 | 1.00[AMR][1000 genomes] |
| rs7750441 | 1.00[AMR][1000 genomes] |
| rs7753978 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949690 | chr6:48595821-49289855 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv603037 | chr6:48804862-48995221 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv508406 | chr6:48928106-48933198 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv603038 | chr6:48928544-48938399 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv603039 | chr6:48928544-48942969 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | esv3486533 | chr6:48928827-48938933 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 7 | esv3474549 | chr6:48929393-48935091 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 8 | esv3474550 | chr6:48929393-48935091 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 9 | esv3514847 | chr6:48929843-48939641 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 10 | nsv5293 | chr6:48930102-48942492 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 11 | nsv436519 | chr6:48930207-48939735 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 12 | esv3514848 | chr6:48930243-48939566 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:48832200-48944000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr6:48929400-48930800 | Enhancers | HUES48 Cell Line | embryonic stem cell |
