Variant report

Variant	rs73745591
Chromosome Location	chr6:56013813-56013814
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1205110	1.00[AFR][1000 genomes]
rs1211240	0.92[AFR][1000 genomes]
rs2745368	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2764044	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2764045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2840993	0.92[AFR][1000 genomes]
rs2840996	0.85[AFR][1000 genomes]
rs35583895	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6903824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73443729	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73443748	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73445317	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73445357	0.85[AFR][1000 genomes]
rs73461350	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73461356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73461358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73461361	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv526703	chr6:55810482-56023811	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55920600-56018400	Weak transcription	Ovary	ovary
2	chr6:55984000-56037000	Weak transcription	Fetal Kidney	kidney
3	chr6:55999000-56021200	Weak transcription	Aorta	Aorta
4	chr6:56006600-56015400	Weak transcription	Fetal Muscle Leg	muscle
5	chr6:56006600-56018600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr6:56010000-56016600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr6:56011600-56018600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:56011600-56018800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:56013000-56014600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:56013000-56036400	Weak transcription	Colon Smooth Muscle	Colon
11	chr6:56013200-56014000	Enhancers	NHDF-Ad	bronchial
12	chr6:56013600-56014000	Genic enhancers	Fetal Lung	lung
13	chr6:56013800-56014000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:56013800-56014200	Weak transcription	Fetal Stomach	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links