Variant report

Variant	rs73752121
Chromosome Location	chr5:14560102-14560103
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:14559137..14561747-chr5:14565867..14568290,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11952550	0.83[AMR][1000 genomes]
rs11953822	0.83[AMR][1000 genomes]
rs11956097	0.83[AMR][1000 genomes]
rs16903651	0.83[AMR][1000 genomes]
rs55714227	0.83[AMR][1000 genomes]
rs55957515	0.83[AMR][1000 genomes]
rs56044433	0.83[AMR][1000 genomes]
rs56155042	0.83[AMR][1000 genomes]
rs56297478	0.83[AMR][1000 genomes]
rs56350972	0.83[AMR][1000 genomes]
rs60753214	1.00[AMR][1000 genomes]
rs73749521	0.83[AMR][1000 genomes]
rs73749524	0.83[AMR][1000 genomes]
rs73749525	0.83[AMR][1000 genomes]
rs73749526	0.83[AMR][1000 genomes]
rs73749585	0.83[AMR][1000 genomes]
rs73749586	0.83[AMR][1000 genomes]
rs73749593	0.83[AMR][1000 genomes]
rs73752126	0.83[AMR][1000 genomes]
rs73752131	0.83[AMR][1000 genomes]
rs73752132	0.83[AMR][1000 genomes]
rs73752133	0.83[AMR][1000 genomes]
rs73752135	0.83[AMR][1000 genomes]
rs73752138	0.83[AMR][1000 genomes]
rs73752139	0.83[AMR][1000 genomes]
rs73752140	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026914	chr5:14237782-14751588	Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1018187	chr5:14385164-15127103	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv830211	chr5:14474675-14675776	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1032951	chr5:14529579-14667342	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:14555600-14560400	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr5:14556000-14560600	Weak transcription	Small Intestine	intestine
3	chr5:14556800-14561000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr5:14557000-14561200	Enhancers	Colonic Mucosa	Colon
5	chr5:14557800-14560200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr5:14557800-14560200	Weak transcription	Pancreas	Pancrea
7	chr5:14558600-14560200	Weak transcription	Brain Germinal Matrix	brain
8	chr5:14558600-14560200	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr5:14558800-14560200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr5:14558800-14562000	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr5:14559000-14560200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr5:14559000-14560400	Enhancers	Fetal Muscle Trunk	muscle
13	chr5:14559000-14560800	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr5:14559000-14560800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr5:14559000-14560800	Enhancers	Spleen	Spleen
16	chr5:14559000-14561000	Enhancers	Primary B cells from peripheral blood	blood
17	chr5:14559000-14561000	Enhancers	Primary T cells fromperipheralblood	blood
18	chr5:14559000-14561600	Enhancers	Primary hematopoietic stem cells	blood
19	chr5:14559200-14560200	Enhancers	Primary B cells from cord blood	blood
20	chr5:14559200-14560200	Enhancers	Primary T cells from cord blood	blood
21	chr5:14559200-14560200	Weak transcription	Fetal Brain Female	brain
22	chr5:14559200-14560600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr5:14559200-14560800	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr5:14559400-14560400	Weak transcription	Fetal Brain Male	brain
25	chr5:14559600-14560600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
26	chr5:14559600-14560600	Enhancers	Dnd41	blood
27	chr5:14559600-14560800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr5:14559800-14560200	Enhancers	Duodenum Mucosa	Duodenum
29	chr5:14559800-14560400	Enhancers	Colon Smooth Muscle	Colon
30	chr5:14559800-14560400	Enhancers	Pancreatic Islets	Pancreatic Islet
31	chr5:14559800-14560600	Enhancers	GM12878-XiMat	blood
32	chr5:14559800-14560800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
33	chr5:14559800-14560800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
34	chr5:14559800-14560800	Enhancers	Fetal Intestine Small	intestine
35	chr5:14559800-14560800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
36	chr5:14560000-14560200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
37	chr5:14560000-14560200	Enhancers	Primary T killer memory cells from peripheral blood	blood
38	chr5:14560000-14560600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
39	chr5:14560000-14560800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr5:14560000-14560800	Enhancers	Fetal Intestine Large	intestine
41	chr5:14560000-14561200	Enhancers	Fetal Thymus	thymus

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